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Cluster: Rep_1189_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1189_c_24 Rep_1189_c_24_111 126702 128432 + 3.A.4.1.1
NULL(UNKNOWN) Rep_1189_c_24 Rep_1189_c_24_112 128432 128533 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_1189_c_24 Rep_1189_c_24_113 128570 128884 + HTH_5
TC Rep_1189_c_24 Rep_1189_c_24_114 128887 130176 + 2.A.45.1.1
pfam Rep_1189_c_24 Rep_1189_c_24_115 130193 130588 + LMWPc
pfam Rep_1189_c_24 Rep_1189_c_24_116 130794 131276 - DUF1541 | DUF1541
CAZyme Rep_1189_c_24 Rep_1189_c_24_117 131296 132729 - AA1
TC Rep_1189_c_24 Rep_1189_c_24_118 132744 134807 - 3.A.3.5.2
Gene ID: Rep_1189_c_24_111
Type: TC
Location: 126702 - 128432 (+)
Gene ID: Rep_1189_c_24_112
Type:
Location: 128432 - 128533 (+)
Gene ID: Rep_1189_c_24_113
Type: TF
Location: 128570 - 128884 (+)
Gene ID: Rep_1189_c_24_114
Type: TC
Location: 128887 - 130176 (+)
Gene ID: Rep_1189_c_24_115
Type: pfam
Location: 130193 - 130588 (+)
Gene ID: Rep_1189_c_24_116
Type: pfam
Location: 130794 - 131276 (-)
Gene ID: Rep_1189_c_24_117
Type: CAZyme
Location: 131296 - 132729 (-)
Gene ID: Rep_1189_c_24_118
Type: TC
Location: 132744 - 134807 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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