Cluster: Rep_1189_CGC5
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1189
- CGC Family ID: CGCFAM_01763
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1189_c_17 | Rep_1189_c_17_9 | 13961 | 14527 | + | 9.B.46.1.1 |
| pfam | Rep_1189_c_17 | Rep_1189_c_17_10 | 14524 | 14670 | + | AgrD |
| TC | Rep_1189_c_17 | Rep_1189_c_17_11 | 14693 | 15982 | + | 9.B.14.1.13 |
| TF | Rep_1189_c_17 | Rep_1189_c_17_12 | 15998 | 16714 | + | LytTR |
| STP | Rep_1189_c_17 | Rep_1189_c_17_13 | 16779 | 17738 | - | PfkB |
| CAZyme | Rep_1189_c_17 | Rep_1189_c_17_14 | 17745 | 19220 | - | GH32 |
| TF | Rep_1189_c_17 | Rep_1189_c_17_15 | 19446 | 20396 | - | LacI |
| TC | Rep_1189_c_17 | Rep_1189_c_17_16 | 20540 | 21790 | - | 1.A.11.1.4 |
| TC | Rep_1189_c_17 | Rep_1189_c_17_17 | 21968 | 22192 | - | 9.B.102.1.12 |
| TC | Rep_1189_c_17 | Rep_1189_c_17_18 | 22211 | 23305 | - | 9.B.102.1.2 |
| pfam | Rep_1189_c_17 | Rep_1189_c_17_19 | 23387 | 23674 | - | POB3_N |
| TF | Rep_1189_c_17 | Rep_1189_c_17_20 | 23763 | 24404 | - | 0045030 |
| TC | Rep_1189_c_17 | Rep_1189_c_17_21 | 24761 | 26698 | + | 3.A.1.121.4 |
Gene ID: Rep_1189_c_17_9
Type: TC
Location: 13961 - 14527 (+)
Type: TC
Location: 13961 - 14527 (+)
Gene ID: Rep_1189_c_17_10
Type: pfam
Location: 14524 - 14670 (+)
Type: pfam
Location: 14524 - 14670 (+)
Gene ID: Rep_1189_c_17_11
Type: TC
Location: 14693 - 15982 (+)
Type: TC
Location: 14693 - 15982 (+)
Gene ID: Rep_1189_c_17_12
Type: TF
Location: 15998 - 16714 (+)
Type: TF
Location: 15998 - 16714 (+)
Gene ID: Rep_1189_c_17_13
Type: STP
Location: 16779 - 17738 (-)
Type: STP
Location: 16779 - 17738 (-)
Gene ID: Rep_1189_c_17_14
Type: CAZyme
Location: 17745 - 19220 (-)
Type: CAZyme
Location: 17745 - 19220 (-)
Gene ID: Rep_1189_c_17_15
Type: TF
Location: 19446 - 20396 (-)
Type: TF
Location: 19446 - 20396 (-)
Gene ID: Rep_1189_c_17_16
Type: TC
Location: 20540 - 21790 (-)
Type: TC
Location: 20540 - 21790 (-)
Gene ID: Rep_1189_c_17_17
Type: TC
Location: 21968 - 22192 (-)
Type: TC
Location: 21968 - 22192 (-)
Gene ID: Rep_1189_c_17_18
Type: TC
Location: 22211 - 23305 (-)
Type: TC
Location: 22211 - 23305 (-)
Gene ID: Rep_1189_c_17_19
Type: pfam
Location: 23387 - 23674 (-)
Type: pfam
Location: 23387 - 23674 (-)
Gene ID: Rep_1189_c_17_20
Type: TF
Location: 23763 - 24404 (-)
Type: TF
Location: 23763 - 24404 (-)
Gene ID: Rep_1189_c_17_21
Type: TC
Location: 24761 - 26698 (+)
Type: TC
Location: 24761 - 26698 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Staphylococcaceae
Genus
Staphylococcus
Species
Staphylococcus capitis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.