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Cluster: Rep_1189_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1189_c_28 Rep_1189_c_28_34 27939 30341 + 2.A.63.1.4
TC Rep_1189_c_28 Rep_1189_c_28_35 30328 30753 + 2.A.63.1.2
TC Rep_1189_c_28 Rep_1189_c_28_36 30750 31094 + 2.A.63.1.3
TC Rep_1189_c_28 Rep_1189_c_28_37 31084 32583 + 2.A.63.1.4
TC Rep_1189_c_28 Rep_1189_c_28_38 32584 33066 + 2.A.63.1.2
pfam Rep_1189_c_28 Rep_1189_c_28_39 33063 33365 + MrpF_PhaF
TC Rep_1189_c_28 Rep_1189_c_28_40 33340 33810 + 2.A.63.1.4
TC Rep_1189_c_28 Rep_1189_c_28_41 34299 36338 + 2.A.36.3.2
TC Rep_1189_c_28 Rep_1189_c_28_42 36947 37876 - 3.A.1.15.15
TC Rep_1189_c_28 Rep_1189_c_28_43 37873 38709 - 3.A.1.15.15
TC Rep_1189_c_28 Rep_1189_c_28_44 38710 39462 - 3.A.1.15.15
TF Rep_1189_c_28 Rep_1189_c_28_45 39583 40230 + Fe_dep_repress
pfam Rep_1189_c_28 Rep_1189_c_28_46 40283 41029 - Peptidase_M50B
CAZyme Rep_1189_c_28 Rep_1189_c_28_47 41258 42019 + GT26
pfam Rep_1189_c_28 Rep_1189_c_28_48 42464 43489 - 2-Hacid_dh | 2-Hacid_dh_C | KARI_N
pfam Rep_1189_c_28 Rep_1189_c_28_49 43707 44096 - MpsC
TC Rep_1189_c_28 Rep_1189_c_28_50 44271 45065 - 3.A.1.104.2
TC Rep_1189_c_28 Rep_1189_c_28_51 45381 46202 + 3.A.1.104.2
pfam Rep_1189_c_28 Rep_1189_c_28_52 46373 47467 + Glyphos_transf
CAZyme Rep_1189_c_28 Rep_1189_c_28_53 47464 48531 + GT2
pfam Rep_1189_c_28 Rep_1189_c_28_54 48657 49055 + CTP_transf_like
TC Rep_1189_c_28 Rep_1189_c_28_55 49411 51138 + 3.A.1.123.2
TC Rep_1189_c_28 Rep_1189_c_28_56 51448 52677 + 2.A.41.1.3
TC Rep_1189_c_28 Rep_1189_c_28_57 53551 54384 + 2.A.115.1.2
TC Rep_1189_c_28 Rep_1189_c_28_58 54633 55430 + 3.A.1.14.7
TC Rep_1189_c_28 Rep_1189_c_28_59 55458 56462 + 3.A.1.14.7
TC Rep_1189_c_28 Rep_1189_c_28_60 56459 57475 + 3.A.1.14.15
Gene ID: Rep_1189_c_28_34
Type: TC
Location: 27939 - 30341 (+)
Gene ID: Rep_1189_c_28_35
Type: TC
Location: 30328 - 30753 (+)
Gene ID: Rep_1189_c_28_36
Type: TC
Location: 30750 - 31094 (+)
Gene ID: Rep_1189_c_28_37
Type: TC
Location: 31084 - 32583 (+)
Gene ID: Rep_1189_c_28_38
Type: TC
Location: 32584 - 33066 (+)
Gene ID: Rep_1189_c_28_39
Type: pfam
Location: 33063 - 33365 (+)
Gene ID: Rep_1189_c_28_40
Type: TC
Location: 33340 - 33810 (+)
Gene ID: Rep_1189_c_28_41
Type: TC
Location: 34299 - 36338 (+)
Gene ID: Rep_1189_c_28_42
Type: TC
Location: 36947 - 37876 (-)
Gene ID: Rep_1189_c_28_43
Type: TC
Location: 37873 - 38709 (-)
Gene ID: Rep_1189_c_28_44
Type: TC
Location: 38710 - 39462 (-)
Gene ID: Rep_1189_c_28_45
Type: TF
Location: 39583 - 40230 (+)
Gene ID: Rep_1189_c_28_46
Type: pfam
Location: 40283 - 41029 (-)
Gene ID: Rep_1189_c_28_47
Type: CAZyme
Location: 41258 - 42019 (+)
Gene ID: Rep_1189_c_28_48
Type: pfam
Location: 42464 - 43489 (-)
Gene ID: Rep_1189_c_28_49
Type: pfam
Location: 43707 - 44096 (-)
Gene ID: Rep_1189_c_28_50
Type: TC
Location: 44271 - 45065 (-)
Gene ID: Rep_1189_c_28_51
Type: TC
Location: 45381 - 46202 (+)
Gene ID: Rep_1189_c_28_52
Type: pfam
Location: 46373 - 47467 (+)
Gene ID: Rep_1189_c_28_53
Type: CAZyme
Location: 47464 - 48531 (+)
Gene ID: Rep_1189_c_28_54
Type: pfam
Location: 48657 - 49055 (+)
Gene ID: Rep_1189_c_28_55
Type: TC
Location: 49411 - 51138 (+)
Gene ID: Rep_1189_c_28_56
Type: TC
Location: 51448 - 52677 (+)
Gene ID: Rep_1189_c_28_57
Type: TC
Location: 53551 - 54384 (+)
Gene ID: Rep_1189_c_28_58
Type: TC
Location: 54633 - 55430 (+)
Gene ID: Rep_1189_c_28_59
Type: TC
Location: 55458 - 56462 (+)
Gene ID: Rep_1189_c_28_60
Type: TC
Location: 56459 - 57475 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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