Cluster: Rep_1189_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1189
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1189_c_27 | Rep_1189_c_27_527 | 537294 | 538802 | - | GT4 |
| TC | Rep_1189_c_27 | Rep_1189_c_27_528 | 538821 | 541211 | - | 3.A.5.10.1 |
| pfam | Rep_1189_c_27 | Rep_1189_c_27_529 | 541204 | 541776 | - | Sec-ASP3 |
| TC | Rep_1189_c_27 | Rep_1189_c_27_530 | 541763 | 543322 | - | 3.A.5.10.1 |
| TC | Rep_1189_c_27 | Rep_1189_c_27_531 | 543306 | 544874 | - | 3.A.5.10.1 |
| TC | Rep_1189_c_27 | Rep_1189_c_27_532 | 544885 | 546084 | - | 3.A.5.10.1 |
Gene ID: Rep_1189_c_27_527
Type: CAZyme
Location: 537294 - 538802 (-)
Type: CAZyme
Location: 537294 - 538802 (-)
Gene ID: Rep_1189_c_27_528
Type: TC
Location: 538821 - 541211 (-)
Type: TC
Location: 538821 - 541211 (-)
Gene ID: Rep_1189_c_27_529
Type: pfam
Location: 541204 - 541776 (-)
Type: pfam
Location: 541204 - 541776 (-)
Gene ID: Rep_1189_c_27_530
Type: TC
Location: 541763 - 543322 (-)
Type: TC
Location: 541763 - 543322 (-)
Gene ID: Rep_1189_c_27_531
Type: TC
Location: 543306 - 544874 (-)
Type: TC
Location: 543306 - 544874 (-)
Gene ID: Rep_1189_c_27_532
Type: TC
Location: 544885 - 546084 (-)
Type: TC
Location: 544885 - 546084 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Staphylococcaceae
Genus
Staphylococcus
Species
Staphylococcus capitis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.