dbCAN Logo

Cluster: Rep_1189_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1189_c_5 Rep_1189_c_5_12 26060 26560 + 4.A.1.1.14
pfam Rep_1189_c_5 Rep_1189_c_5_13 26560 26784 + YozE_SAM_like
TC Rep_1189_c_5 Rep_1189_c_5_14 27143 28621 + 9.B.174.1.1
pfam Rep_1189_c_5 Rep_1189_c_5_15 28838 29341 + Acetyltransf_1 | Acetyltransf_4 | Acetyltransf_10
CAZyme Rep_1189_c_5 Rep_1189_c_5_16 29359 30432 + GT28
pfam Rep_1189_c_5 Rep_1189_c_5_17 30445 31059 + PAP2
TC Rep_1189_c_5 Rep_1189_c_5_18 31388 32479 + 3.A.1.1.26
TC Rep_1189_c_5 Rep_1189_c_5_19 32476 33432 + 3.A.1.1.10
STP Rep_1189_c_5 Rep_1189_c_5_20 33444 35132 + SBP_bac_1
TC Rep_1189_c_5 Rep_1189_c_5_21 35148 36044 + 3.A.1.1.29
Gene ID: Rep_1189_c_5_12
Type: TC
Location: 26060 - 26560 (+)
Gene ID: Rep_1189_c_5_13
Type: pfam
Location: 26560 - 26784 (+)
Gene ID: Rep_1189_c_5_14
Type: TC
Location: 27143 - 28621 (+)
Gene ID: Rep_1189_c_5_15
Type: pfam
Location: 28838 - 29341 (+)
Gene ID: Rep_1189_c_5_16
Type: CAZyme
Location: 29359 - 30432 (+)
Gene ID: Rep_1189_c_5_17
Type: pfam
Location: 30445 - 31059 (+)
Gene ID: Rep_1189_c_5_18
Type: TC
Location: 31388 - 32479 (+)
Gene ID: Rep_1189_c_5_19
Type: TC
Location: 32476 - 33432 (+)
Gene ID: Rep_1189_c_5_20
Type: STP
Location: 33444 - 35132 (+)
Gene ID: Rep_1189_c_5_21
Type: TC
Location: 35148 - 36044 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List