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Cluster: Rep_1187_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1187_c_1 Rep_1187_c_1_109 115738 118140 + 2.A.63.1.2
TC Rep_1187_c_1 Rep_1187_c_1_110 118127 118552 + 2.A.63.1.2
TC Rep_1187_c_1 Rep_1187_c_1_111 118549 118899 + 2.A.63.1.3
TC Rep_1187_c_1 Rep_1187_c_1_112 118889 120388 + 2.A.63.1.4
pfam Rep_1187_c_1 Rep_1187_c_1_113 120385 120867 + MNHE
pfam Rep_1187_c_1 Rep_1187_c_1_114 120867 121169 + MrpF_PhaF
TC Rep_1187_c_1 Rep_1187_c_1_115 121144 121641 + 2.A.63.1.4
TC Rep_1187_c_1 Rep_1187_c_1_116 121948 123987 + 2.A.36.3.2
TC Rep_1187_c_1 Rep_1187_c_1_117 124227 125147 - 3.A.1.15.15
TC Rep_1187_c_1 Rep_1187_c_1_118 125135 125989 - 3.A.1.15.15
TC Rep_1187_c_1 Rep_1187_c_1_119 126013 126666 - 3.A.1.15.15
TF Rep_1187_c_1 Rep_1187_c_1_120 126836 127483 + Fe_dep_repress
pfam Rep_1187_c_1 Rep_1187_c_1_121 127633 128379 - Peptidase_M50B
CAZyme Rep_1187_c_1 Rep_1187_c_1_122 128580 129350 + GT26
pfam Rep_1187_c_1 Rep_1187_c_1_123 129495 130520 - 2-Hacid_dh | 2-Hacid_dh_C
pfam Rep_1187_c_1 Rep_1187_c_1_124 130711 130938 - MpsC
TC Rep_1187_c_1 Rep_1187_c_1_125 131204 131998 - 3.A.1.104.2
TC Rep_1187_c_1 Rep_1187_c_1_126 132322 133209 + 3.A.1.104.2
NULL(UNKNOWN) Rep_1187_c_1 Rep_1187_c_1_127 133240 133488 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1187_c_1 Rep_1187_c_1_128 133624 134712 + Glyphos_transf
CAZyme Rep_1187_c_1 Rep_1187_c_1_129 134709 135776 + GT2
pfam Rep_1187_c_1 Rep_1187_c_1_130 135879 136277 + CTP_transf_like
peptidase Rep_1187_c_1 Rep_1187_c_1_131 136611 137909 - S11.UPW
TC Rep_1187_c_1 Rep_1187_c_1_132 138201 139928 + 3.A.1.123.2
CAZyme Rep_1187_c_1 Rep_1187_c_1_133 140239 141726 + GT4
CAZyme Rep_1187_c_1 Rep_1187_c_1_134 141748 143916 + GT2
TC Rep_1187_c_1 Rep_1187_c_1_135 144429 145658 + 2.A.41.1.3
NULL(UNKNOWN) Rep_1187_c_1 Rep_1187_c_1_136 146202 146486 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1187_c_1 Rep_1187_c_1_137 146746 147579 + 2.A.115.1.2
TC Rep_1187_c_1 Rep_1187_c_1_138 148002 148790 + 3.A.1.14.7
TC Rep_1187_c_1 Rep_1187_c_1_139 148817 149821 + 3.A.1.14.7
TC Rep_1187_c_1 Rep_1187_c_1_140 149818 150834 + 3.A.1.14.15
pfam Rep_1187_c_1 Rep_1187_c_1_141 151353 151730 + EIIA-man
NULL(UNKNOWN) Rep_1187_c_1 Rep_1187_c_1_142 151847 152350 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1187_c_1 Rep_1187_c_1_143 152668 153735 + 2.A.120.1.8
Gene ID: Rep_1187_c_1_109
Type: TC
Location: 115738 - 118140 (+)
Gene ID: Rep_1187_c_1_110
Type: TC
Location: 118127 - 118552 (+)
Gene ID: Rep_1187_c_1_111
Type: TC
Location: 118549 - 118899 (+)
Gene ID: Rep_1187_c_1_112
Type: TC
Location: 118889 - 120388 (+)
Gene ID: Rep_1187_c_1_113
Type: pfam
Location: 120385 - 120867 (+)
Gene ID: Rep_1187_c_1_114
Type: pfam
Location: 120867 - 121169 (+)
Gene ID: Rep_1187_c_1_115
Type: TC
Location: 121144 - 121641 (+)
Gene ID: Rep_1187_c_1_116
Type: TC
Location: 121948 - 123987 (+)
Gene ID: Rep_1187_c_1_117
Type: TC
Location: 124227 - 125147 (-)
Gene ID: Rep_1187_c_1_118
Type: TC
Location: 125135 - 125989 (-)
Gene ID: Rep_1187_c_1_119
Type: TC
Location: 126013 - 126666 (-)
Gene ID: Rep_1187_c_1_120
Type: TF
Location: 126836 - 127483 (+)
Gene ID: Rep_1187_c_1_121
Type: pfam
Location: 127633 - 128379 (-)
Gene ID: Rep_1187_c_1_122
Type: CAZyme
Location: 128580 - 129350 (+)
Gene ID: Rep_1187_c_1_123
Type: pfam
Location: 129495 - 130520 (-)
Gene ID: Rep_1187_c_1_124
Type: pfam
Location: 130711 - 130938 (-)
Gene ID: Rep_1187_c_1_125
Type: TC
Location: 131204 - 131998 (-)
Gene ID: Rep_1187_c_1_126
Type: TC
Location: 132322 - 133209 (+)
Gene ID: Rep_1187_c_1_127
Type:
Location: 133240 - 133488 (+)
Gene ID: Rep_1187_c_1_128
Type: pfam
Location: 133624 - 134712 (+)
Gene ID: Rep_1187_c_1_129
Type: CAZyme
Location: 134709 - 135776 (+)
Gene ID: Rep_1187_c_1_130
Type: pfam
Location: 135879 - 136277 (+)
Gene ID: Rep_1187_c_1_131
Type: peptidase
Location: 136611 - 137909 (-)
Gene ID: Rep_1187_c_1_132
Type: TC
Location: 138201 - 139928 (+)
Gene ID: Rep_1187_c_1_133
Type: CAZyme
Location: 140239 - 141726 (+)
Gene ID: Rep_1187_c_1_134
Type: CAZyme
Location: 141748 - 143916 (+)
Gene ID: Rep_1187_c_1_135
Type: TC
Location: 144429 - 145658 (+)
Gene ID: Rep_1187_c_1_136
Type:
Location: 146202 - 146486 (+)
Gene ID: Rep_1187_c_1_137
Type: TC
Location: 146746 - 147579 (+)
Gene ID: Rep_1187_c_1_138
Type: TC
Location: 148002 - 148790 (+)
Gene ID: Rep_1187_c_1_139
Type: TC
Location: 148817 - 149821 (+)
Gene ID: Rep_1187_c_1_140
Type: TC
Location: 149818 - 150834 (+)
Gene ID: Rep_1187_c_1_141
Type: pfam
Location: 151353 - 151730 (+)
Gene ID: Rep_1187_c_1_142
Type:
Location: 151847 - 152350 (+)
Gene ID: Rep_1187_c_1_143
Type: TC
Location: 152668 - 153735 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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