Cluster: Rep_1187_CGC31
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1187
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1187_c_25 | Rep_1187_c_25_28 | 25164 | 25871 | - | GH23 |
| pfam | Rep_1187_c_25 | Rep_1187_c_25_29 | 26350 | 26751 | - | SSB |
| pfam | Rep_1187_c_25 | Rep_1187_c_25_30 | 26941 | 27393 | + | YwpF |
| TC | Rep_1187_c_25 | Rep_1187_c_25_31 | 27839 | 29461 | - | 3.A.1.106.2 |
| TC | Rep_1187_c_25 | Rep_1187_c_25_32 | 29543 | 31297 | - | 3.A.1.21.2 |
Gene ID: Rep_1187_c_25_28
Type: CAZyme
Location: 25164 - 25871 (-)
Type: CAZyme
Location: 25164 - 25871 (-)
Gene ID: Rep_1187_c_25_29
Type: pfam
Location: 26350 - 26751 (-)
Type: pfam
Location: 26350 - 26751 (-)
Gene ID: Rep_1187_c_25_30
Type: pfam
Location: 26941 - 27393 (+)
Type: pfam
Location: 26941 - 27393 (+)
Gene ID: Rep_1187_c_25_31
Type: TC
Location: 27839 - 29461 (-)
Type: TC
Location: 27839 - 29461 (-)
Gene ID: Rep_1187_c_25_32
Type: TC
Location: 29543 - 31297 (-)
Type: TC
Location: 29543 - 31297 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Staphylococcaceae
Genus
Staphylococcus
Species
Staphylococcus lugdunensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.