Cluster: Rep_1187_CGC30
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1187
- CGC Family ID: CGCFAM_01763
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1187_c_20 | Rep_1187_c_20_17 | 17240 | 19183 | - | 3.A.1.120.6 |
| TF | Rep_1187_c_20 | Rep_1187_c_20_18 | 19449 | 20084 | + | 0045030 |
| NULL(UNKNOWN) | Rep_1187_c_20 | Rep_1187_c_20_19 | 20112 | 20393 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1187_c_20 | Rep_1187_c_20_20 | 20503 | 21597 | + | 9.B.102.1.2 |
| TC | Rep_1187_c_20 | Rep_1187_c_20_21 | 21614 | 21838 | + | 9.B.102.1.12 |
| TC | Rep_1187_c_20 | Rep_1187_c_20_22 | 22033 | 23277 | + | 1.A.11.1.5 |
| TF | Rep_1187_c_20 | Rep_1187_c_20_23 | 23377 | 24327 | + | LacI |
| CAZyme | Rep_1187_c_20 | Rep_1187_c_20_24 | 24427 | 25911 | + | GH32 |
| STP | Rep_1187_c_20 | Rep_1187_c_20_25 | 25912 | 26886 | + | PfkB |
| TF | Rep_1187_c_20 | Rep_1187_c_20_26 | 26978 | 27694 | - | LytTR |
| TC | Rep_1187_c_20 | Rep_1187_c_20_27 | 27707 | 28996 | - | 9.B.14.1.13 |
| pfam | Rep_1187_c_20 | Rep_1187_c_20_28 | 29017 | 29160 | - | AgrD |
| TC | Rep_1187_c_20 | Rep_1187_c_20_29 | 29163 | 29729 | - | 9.B.46.1.1 |
Gene ID: Rep_1187_c_20_17
Type: TC
Location: 17240 - 19183 (-)
Type: TC
Location: 17240 - 19183 (-)
Gene ID: Rep_1187_c_20_18
Type: TF
Location: 19449 - 20084 (+)
Type: TF
Location: 19449 - 20084 (+)
Gene ID: Rep_1187_c_20_19
Type:
Location: 20112 - 20393 (+)
Type:
Location: 20112 - 20393 (+)
Gene ID: Rep_1187_c_20_20
Type: TC
Location: 20503 - 21597 (+)
Type: TC
Location: 20503 - 21597 (+)
Gene ID: Rep_1187_c_20_21
Type: TC
Location: 21614 - 21838 (+)
Type: TC
Location: 21614 - 21838 (+)
Gene ID: Rep_1187_c_20_22
Type: TC
Location: 22033 - 23277 (+)
Type: TC
Location: 22033 - 23277 (+)
Gene ID: Rep_1187_c_20_23
Type: TF
Location: 23377 - 24327 (+)
Type: TF
Location: 23377 - 24327 (+)
Gene ID: Rep_1187_c_20_24
Type: CAZyme
Location: 24427 - 25911 (+)
Type: CAZyme
Location: 24427 - 25911 (+)
Gene ID: Rep_1187_c_20_25
Type: STP
Location: 25912 - 26886 (+)
Type: STP
Location: 25912 - 26886 (+)
Gene ID: Rep_1187_c_20_26
Type: TF
Location: 26978 - 27694 (-)
Type: TF
Location: 26978 - 27694 (-)
Gene ID: Rep_1187_c_20_27
Type: TC
Location: 27707 - 28996 (-)
Type: TC
Location: 27707 - 28996 (-)
Gene ID: Rep_1187_c_20_28
Type: pfam
Location: 29017 - 29160 (-)
Type: pfam
Location: 29017 - 29160 (-)
Gene ID: Rep_1187_c_20_29
Type: TC
Location: 29163 - 29729 (-)
Type: TC
Location: 29163 - 29729 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Staphylococcaceae
Genus
Staphylococcus
Species
Staphylococcus lugdunensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.