Cluster: Rep_1187_CGC29
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1187
- CGC Family ID: CGCFAM_01764
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1187_c_18 | Rep_1187_c_18_3 | 1531 | 2025 | - | 2.A.79.1.7 |
| TC | Rep_1187_c_18 | Rep_1187_c_18_4 | 2042 | 2803 | - | 2.A.79.1.4 |
| TC | Rep_1187_c_18 | Rep_1187_c_18_5 | 3057 | 4130 | - | 9.B.34.1.1 |
| TC | Rep_1187_c_18 | Rep_1187_c_18_6 | 4369 | 5508 | + | 9.B.146.1.7 |
| pfam | Rep_1187_c_18 | Rep_1187_c_18_7 | 5561 | 6202 | - | UPF0029 | DUF1949 |
| pfam | Rep_1187_c_18 | Rep_1187_c_18_8 | 6600 | 7466 | + | DegV |
| TC | Rep_1187_c_18 | Rep_1187_c_18_9 | 7527 | 8852 | + | 3.A.11.1.1 |
| TC | Rep_1187_c_18 | Rep_1187_c_18_10 | 8815 | 9489 | + | 3.A.11.1.4 |
| pfam | Rep_1187_c_18 | Rep_1187_c_18_11 | 9548 | 10120 | + | Ribosomal_S30AE | Ribosom_S30AE_C |
| pfam | Rep_1187_c_18 | Rep_1187_c_18_12 | 10537 | 11316 | + | Amidase_2 |
| TC | Rep_1187_c_18 | Rep_1187_c_18_13 | 11858 | 14389 | + | 3.A.5.1.1 |
| pfam | Rep_1187_c_18 | Rep_1187_c_18_14 | 14745 | 15746 | + | RF-1 | PCRF |
| CAZyme | Rep_1187_c_18 | Rep_1187_c_18_15 | 16238 | 17209 | + | CBM50 |
Gene ID: Rep_1187_c_18_3
Type: TC
Location: 1531 - 2025 (-)
Type: TC
Location: 1531 - 2025 (-)
Gene ID: Rep_1187_c_18_4
Type: TC
Location: 2042 - 2803 (-)
Type: TC
Location: 2042 - 2803 (-)
Gene ID: Rep_1187_c_18_5
Type: TC
Location: 3057 - 4130 (-)
Type: TC
Location: 3057 - 4130 (-)
Gene ID: Rep_1187_c_18_6
Type: TC
Location: 4369 - 5508 (+)
Type: TC
Location: 4369 - 5508 (+)
Gene ID: Rep_1187_c_18_7
Type: pfam
Location: 5561 - 6202 (-)
Type: pfam
Location: 5561 - 6202 (-)
Gene ID: Rep_1187_c_18_8
Type: pfam
Location: 6600 - 7466 (+)
Type: pfam
Location: 6600 - 7466 (+)
Gene ID: Rep_1187_c_18_9
Type: TC
Location: 7527 - 8852 (+)
Type: TC
Location: 7527 - 8852 (+)
Gene ID: Rep_1187_c_18_10
Type: TC
Location: 8815 - 9489 (+)
Type: TC
Location: 8815 - 9489 (+)
Gene ID: Rep_1187_c_18_11
Type: pfam
Location: 9548 - 10120 (+)
Type: pfam
Location: 9548 - 10120 (+)
Gene ID: Rep_1187_c_18_12
Type: pfam
Location: 10537 - 11316 (+)
Type: pfam
Location: 10537 - 11316 (+)
Gene ID: Rep_1187_c_18_13
Type: TC
Location: 11858 - 14389 (+)
Type: TC
Location: 11858 - 14389 (+)
Gene ID: Rep_1187_c_18_14
Type: pfam
Location: 14745 - 15746 (+)
Type: pfam
Location: 14745 - 15746 (+)
Gene ID: Rep_1187_c_18_15
Type: CAZyme
Location: 16238 - 17209 (+)
Type: CAZyme
Location: 16238 - 17209 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Staphylococcaceae
Genus
Staphylococcus
Species
Staphylococcus lugdunensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.