Cluster: Rep_1187_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1187
- CGC Family ID: CGCFAM_09165
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1187_c_11 | Rep_1187_c_11_26 | 24289 | 25203 | - | 3.A.1.131.1 |
| TF | Rep_1187_c_11 | Rep_1187_c_11_27 | 25294 | 25965 | - | Trans_reg_C |
| TC | Rep_1187_c_11 | Rep_1187_c_11_28 | 26244 | 27521 | + | 2.A.1.5.3 |
| CAZyme | Rep_1187_c_11 | Rep_1187_c_11_29 | 27530 | 28957 | + | GH32 |
Gene ID: Rep_1187_c_11_26
Type: TC
Location: 24289 - 25203 (-)
Type: TC
Location: 24289 - 25203 (-)
Gene ID: Rep_1187_c_11_27
Type: TF
Location: 25294 - 25965 (-)
Type: TF
Location: 25294 - 25965 (-)
Gene ID: Rep_1187_c_11_28
Type: TC
Location: 26244 - 27521 (+)
Type: TC
Location: 26244 - 27521 (+)
Gene ID: Rep_1187_c_11_29
Type: CAZyme
Location: 27530 - 28957 (+)
Type: CAZyme
Location: 27530 - 28957 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Staphylococcales
Family
Staphylococcaceae
Genus
Staphylococcus
Species
Staphylococcus lugdunensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.