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Cluster: Rep_1187_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1187_c_10 Rep_1187_c_10_42 44335 44997 + 8.A.3.2.4
TC Rep_1187_c_10 Rep_1187_c_10_43 45009 45704 + 8.A.3.2.1
pfam Rep_1187_c_10 Rep_1187_c_10_44 45705 46415 + CpsB_CapC
TC Rep_1187_c_10 Rep_1187_c_10_45 46506 48305 + 9.B.18.2.1
TC Rep_1187_c_10 Rep_1187_c_10_46 48316 49338 + 9.B.18.2.1
pfam Rep_1187_c_10 Rep_1187_c_10_47 49350 50459 + Epimerase | Polysacc_synt_C
pfam Rep_1187_c_10 Rep_1187_c_10_48 50464 51588 + Epimerase_2
CAZyme Rep_1187_c_10 Rep_1187_c_10_49 51591 52670 + GT4
Gene ID: Rep_1187_c_10_42
Type: TC
Location: 44335 - 44997 (+)
Gene ID: Rep_1187_c_10_43
Type: TC
Location: 45009 - 45704 (+)
Gene ID: Rep_1187_c_10_44
Type: pfam
Location: 45705 - 46415 (+)
Gene ID: Rep_1187_c_10_45
Type: TC
Location: 46506 - 48305 (+)
Gene ID: Rep_1187_c_10_46
Type: TC
Location: 48316 - 49338 (+)
Gene ID: Rep_1187_c_10_47
Type: pfam
Location: 49350 - 50459 (+)
Gene ID: Rep_1187_c_10_48
Type: pfam
Location: 50464 - 51588 (+)
Gene ID: Rep_1187_c_10_49
Type: CAZyme
Location: 51591 - 52670 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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