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Cluster: Rep_1187_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1187_c_7 Rep_1187_c_7_31 30900 31379 + 4.A.6.1.18
TC Rep_1187_c_7 Rep_1187_c_7_32 31399 32298 + 4.A.6.1.18
TC Rep_1187_c_7 Rep_1187_c_7_33 32282 33175 + 4.A.6.1.18
TC Rep_1187_c_7 Rep_1187_c_7_34 33193 33588 + 4.A.6.1.18
TF Rep_1187_c_7 Rep_1187_c_7_35 33756 34457 - Trans_reg_C
STP Rep_1187_c_7 Rep_1187_c_7_36 34459 37113 - HATPase_c | HisKA
TC Rep_1187_c_7 Rep_1187_c_7_37 37381 39057 + 3.A.3.7.1
TC Rep_1187_c_7 Rep_1187_c_7_38 39075 41096 + 3.A.3.7.1
TC Rep_1187_c_7 Rep_1187_c_7_39 41113 41676 + 3.A.3.7.2
TC Rep_1187_c_7 Rep_1187_c_7_40 41983 44055 - 9.A.39.1.1
TC Rep_1187_c_7 Rep_1187_c_7_41 44365 44949 + 3.A.1.31.2
TC Rep_1187_c_7 Rep_1187_c_7_42 44951 45658 + 3.A.1.31.2
TC Rep_1187_c_7 Rep_1187_c_7_43 45670 47130 + 3.A.1.31.2
TC Rep_1187_c_7 Rep_1187_c_7_44 47215 49155 - 9.A.39.1.3
TC Rep_1187_c_7 Rep_1187_c_7_45 49786 50472 + 9.A.39.1.4
TC Rep_1187_c_7 Rep_1187_c_7_46 50475 51872 + 9.A.39.1.3
TC Rep_1187_c_7 Rep_1187_c_7_47 51881 52771 + 3.A.1.14.17
TC Rep_1187_c_7 Rep_1187_c_7_48 52793 53767 + 3.A.1.14.17
TC Rep_1187_c_7 Rep_1187_c_7_49 53748 54527 + 3.A.1.14.10
peptidase Rep_1187_c_7 Rep_1187_c_7_50 54524 55246 + C60.002
pfam Rep_1187_c_7 Rep_1187_c_7_51 55264 55587 + ABM
CAZyme Rep_1187_c_7 Rep_1187_c_7_52 55661 57157 + GH73
TC Rep_1187_c_7 Rep_1187_c_7_53 57509 58507 - 3.A.1.14.4
TC Rep_1187_c_7 Rep_1187_c_7_54 58504 59499 - 3.A.1.14.4
TC Rep_1187_c_7 Rep_1187_c_7_55 59515 60507 - 3.A.1.14.4
Gene ID: Rep_1187_c_7_31
Type: TC
Location: 30900 - 31379 (+)
Gene ID: Rep_1187_c_7_32
Type: TC
Location: 31399 - 32298 (+)
Gene ID: Rep_1187_c_7_33
Type: TC
Location: 32282 - 33175 (+)
Gene ID: Rep_1187_c_7_34
Type: TC
Location: 33193 - 33588 (+)
Gene ID: Rep_1187_c_7_35
Type: TF
Location: 33756 - 34457 (-)
Gene ID: Rep_1187_c_7_36
Type: STP
Location: 34459 - 37113 (-)
Gene ID: Rep_1187_c_7_37
Type: TC
Location: 37381 - 39057 (+)
Gene ID: Rep_1187_c_7_38
Type: TC
Location: 39075 - 41096 (+)
Gene ID: Rep_1187_c_7_39
Type: TC
Location: 41113 - 41676 (+)
Gene ID: Rep_1187_c_7_40
Type: TC
Location: 41983 - 44055 (-)
Gene ID: Rep_1187_c_7_41
Type: TC
Location: 44365 - 44949 (+)
Gene ID: Rep_1187_c_7_42
Type: TC
Location: 44951 - 45658 (+)
Gene ID: Rep_1187_c_7_43
Type: TC
Location: 45670 - 47130 (+)
Gene ID: Rep_1187_c_7_44
Type: TC
Location: 47215 - 49155 (-)
Gene ID: Rep_1187_c_7_45
Type: TC
Location: 49786 - 50472 (+)
Gene ID: Rep_1187_c_7_46
Type: TC
Location: 50475 - 51872 (+)
Gene ID: Rep_1187_c_7_47
Type: TC
Location: 51881 - 52771 (+)
Gene ID: Rep_1187_c_7_48
Type: TC
Location: 52793 - 53767 (+)
Gene ID: Rep_1187_c_7_49
Type: TC
Location: 53748 - 54527 (+)
Gene ID: Rep_1187_c_7_50
Type: peptidase
Location: 54524 - 55246 (+)
Gene ID: Rep_1187_c_7_51
Type: pfam
Location: 55264 - 55587 (+)
Gene ID: Rep_1187_c_7_52
Type: CAZyme
Location: 55661 - 57157 (+)
Gene ID: Rep_1187_c_7_53
Type: TC
Location: 57509 - 58507 (-)
Gene ID: Rep_1187_c_7_54
Type: TC
Location: 58504 - 59499 (-)
Gene ID: Rep_1187_c_7_55
Type: TC
Location: 59515 - 60507 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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