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Cluster: Rep_1158_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1158_c_2 Rep_1158_c_2_44 41834 43186 - 2.A.21.9.1
TF Rep_1158_c_2 Rep_1158_c_2_45 43179 43880 - Trans_reg_C
NULL(UNKNOWN) Rep_1158_c_2 Rep_1158_c_2_46 44164 44505 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1158_c_2 Rep_1158_c_2_47 44531 45844 - GT4
CAZyme Rep_1158_c_2 Rep_1158_c_2_48 45846 46844 - GT4
TF Rep_1158_c_2 Rep_1158_c_2_49 47176 48180 - LacI
peptidase Rep_1158_c_2 Rep_1158_c_2_50 48444 49526 + M24.006
CAZyme Rep_1158_c_2 Rep_1158_c_2_51 49719 53165 - GH25
Gene ID: Rep_1158_c_2_44
Type: TC
Location: 41834 - 43186 (-)
Gene ID: Rep_1158_c_2_45
Type: TF
Location: 43179 - 43880 (-)
Gene ID: Rep_1158_c_2_46
Type:
Location: 44164 - 44505 (-)
Gene ID: Rep_1158_c_2_47
Type: CAZyme
Location: 44531 - 45844 (-)
Gene ID: Rep_1158_c_2_48
Type: CAZyme
Location: 45846 - 46844 (-)
Gene ID: Rep_1158_c_2_49
Type: TF
Location: 47176 - 48180 (-)
Gene ID: Rep_1158_c_2_50
Type: peptidase
Location: 48444 - 49526 (+)
Gene ID: Rep_1158_c_2_51
Type: CAZyme
Location: 49719 - 53165 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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