Cluster: Rep_1158_CGC3
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1158
- CGC Family ID: CGCFAM_00718
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1158_c_0 | Rep_1158_c_0_209 | 213881 | 215287 | - | 3.A.2.1.5 |
| TC | Rep_1158_c_0 | Rep_1158_c_0_210 | 215322 | 216200 | - | 3.A.2.1.1 |
| TC | Rep_1158_c_0 | Rep_1158_c_0_211 | 216216 | 217721 | - | 3.A.2.1.2 |
| pfam | Rep_1158_c_0 | Rep_1158_c_0_212 | 217737 | 218273 | - | OSCP |
| pfam | Rep_1158_c_0 | Rep_1158_c_0_213 | 218273 | 218767 | - | ATP-synt_B | Mt_ATP-synt_B |
| TC | Rep_1158_c_0 | Rep_1158_c_0_214 | 218782 | 219495 | - | 3.A.2.1.2 |
| pfam | Rep_1158_c_0 | Rep_1158_c_0_215 | 219535 | 219735 | - | ATP-synt_C |
| CAZyme | Rep_1158_c_0 | Rep_1158_c_0_216 | 220072 | 222468 | - | GT35 |
| CAZyme | Rep_1158_c_0 | Rep_1158_c_0_217 | 222490 | 223923 | - | GT5 |
| pfam | Rep_1158_c_0 | Rep_1158_c_0_218 | 223920 | 225059 | - | NTP_transferase | Hexapep_GlmU |
| pfam | Rep_1158_c_0 | Rep_1158_c_0_219 | 225049 | 226191 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | Rep_1158_c_0 | Rep_1158_c_0_220 | 226195 | 228105 | - | CBM48 | GH13_9 |
Gene ID: Rep_1158_c_0_209
Type: TC
Location: 213881 - 215287 (-)
Type: TC
Location: 213881 - 215287 (-)
Gene ID: Rep_1158_c_0_210
Type: TC
Location: 215322 - 216200 (-)
Type: TC
Location: 215322 - 216200 (-)
Gene ID: Rep_1158_c_0_211
Type: TC
Location: 216216 - 217721 (-)
Type: TC
Location: 216216 - 217721 (-)
Gene ID: Rep_1158_c_0_212
Type: pfam
Location: 217737 - 218273 (-)
Type: pfam
Location: 217737 - 218273 (-)
Gene ID: Rep_1158_c_0_213
Type: pfam
Location: 218273 - 218767 (-)
Type: pfam
Location: 218273 - 218767 (-)
Gene ID: Rep_1158_c_0_214
Type: TC
Location: 218782 - 219495 (-)
Type: TC
Location: 218782 - 219495 (-)
Gene ID: Rep_1158_c_0_215
Type: pfam
Location: 219535 - 219735 (-)
Type: pfam
Location: 219535 - 219735 (-)
Gene ID: Rep_1158_c_0_216
Type: CAZyme
Location: 220072 - 222468 (-)
Type: CAZyme
Location: 220072 - 222468 (-)
Gene ID: Rep_1158_c_0_217
Type: CAZyme
Location: 222490 - 223923 (-)
Type: CAZyme
Location: 222490 - 223923 (-)
Gene ID: Rep_1158_c_0_218
Type: pfam
Location: 223920 - 225059 (-)
Type: pfam
Location: 223920 - 225059 (-)
Gene ID: Rep_1158_c_0_219
Type: pfam
Location: 225049 - 226191 (-)
Type: pfam
Location: 225049 - 226191 (-)
Gene ID: Rep_1158_c_0_220
Type: CAZyme
Location: 226195 - 228105 (-)
Type: CAZyme
Location: 226195 - 228105 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.