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Cluster: Rep_1158_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1158_c_15 Rep_1158_c_15_13 10230 11165 + 2.A.115.1.1
CAZyme Rep_1158_c_15 Rep_1158_c_15_14 11270 13345 - CBM68 | GH13_14
TF Rep_1158_c_15 Rep_1158_c_15_15 13359 14345 - LacI
NULL(UNKNOWN) Rep_1158_c_15 Rep_1158_c_15_16 14356 15174 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1158_c_15 Rep_1158_c_15_17 15264 16106 - 3.A.1.1.26
TC Rep_1158_c_15 Rep_1158_c_15_18 16108 17403 - 3.A.1.1.26
TC Rep_1158_c_15 Rep_1158_c_15_19 17477 18739 - 3.A.1.1.26
CAZyme Rep_1158_c_15 Rep_1158_c_15_20 19069 20592 + GH77
CAZyme Rep_1158_c_15 Rep_1158_c_15_21 20618 22876 + GT35
Gene ID: Rep_1158_c_15_13
Type: TC
Location: 10230 - 11165 (+)
Gene ID: Rep_1158_c_15_14
Type: CAZyme
Location: 11270 - 13345 (-)
Gene ID: Rep_1158_c_15_15
Type: TF
Location: 13359 - 14345 (-)
Gene ID: Rep_1158_c_15_16
Type:
Location: 14356 - 15174 (-)
Gene ID: Rep_1158_c_15_17
Type: TC
Location: 15264 - 16106 (-)
Gene ID: Rep_1158_c_15_18
Type: TC
Location: 16108 - 17403 (-)
Gene ID: Rep_1158_c_15_19
Type: TC
Location: 17477 - 18739 (-)
Gene ID: Rep_1158_c_15_20
Type: CAZyme
Location: 19069 - 20592 (+)
Gene ID: Rep_1158_c_15_21
Type: CAZyme
Location: 20618 - 22876 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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