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Cluster: Rep_1158_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1158_c_3 Rep_1158_c_3_33 32573 35092 - 3.A.5.1.3
TC Rep_1158_c_3 Rep_1158_c_3_34 35220 37067 - 2.A.3.14.3
pfam Rep_1158_c_3 Rep_1158_c_3_35 37320 38264 - PMI_typeI_cat | MPI_cupin_dom
TF Rep_1158_c_3 Rep_1158_c_3_36 38297 39022 - GntR
TC Rep_1158_c_3 Rep_1158_c_3_37 39056 40324 - 4.A.3.2.2
CAZyme Rep_1158_c_3 Rep_1158_c_3_38 40468 41865 + GH1
TC Rep_1158_c_3 Rep_1158_c_3_39 41992 42312 - 4.A.3.2.2
TC Rep_1158_c_3 Rep_1158_c_3_40 42323 42637 - 4.A.3.2.2
TC Rep_1158_c_3 Rep_1158_c_3_41 42849 44609 - 3.A.1.135.6
TC Rep_1158_c_3 Rep_1158_c_3_42 44599 46365 - 3.A.1.135.6
Gene ID: Rep_1158_c_3_33
Type: TC
Location: 32573 - 35092 (-)
Gene ID: Rep_1158_c_3_34
Type: TC
Location: 35220 - 37067 (-)
Gene ID: Rep_1158_c_3_35
Type: pfam
Location: 37320 - 38264 (-)
Gene ID: Rep_1158_c_3_36
Type: TF
Location: 38297 - 39022 (-)
Gene ID: Rep_1158_c_3_37
Type: TC
Location: 39056 - 40324 (-)
Gene ID: Rep_1158_c_3_38
Type: CAZyme
Location: 40468 - 41865 (+)
Gene ID: Rep_1158_c_3_39
Type: TC
Location: 41992 - 42312 (-)
Gene ID: Rep_1158_c_3_40
Type: TC
Location: 42323 - 42637 (-)
Gene ID: Rep_1158_c_3_41
Type: TC
Location: 42849 - 44609 (-)
Gene ID: Rep_1158_c_3_42
Type: TC
Location: 44599 - 46365 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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