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Cluster: Rep_1157_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1157_c_6 Rep_1157_c_6_17 17873 20392 - 3.A.5.1.1
TC Rep_1157_c_6 Rep_1157_c_6_18 20520 22367 - 2.A.3.14.3
pfam Rep_1157_c_6 Rep_1157_c_6_19 22630 23574 - PMI_typeI_cat | MPI_cupin_dom
TF Rep_1157_c_6 Rep_1157_c_6_20 23605 24330 - GntR
TC Rep_1157_c_6 Rep_1157_c_6_21 24364 24819 - 4.A.3.2.2
TC Rep_1157_c_6 Rep_1157_c_6_22 24857 25630 - 4.A.3.2.8
CAZyme Rep_1157_c_6 Rep_1157_c_6_23 25754 27151 + GH1
TC Rep_1157_c_6 Rep_1157_c_6_24 27285 27605 - 4.A.3.2.2
TC Rep_1157_c_6 Rep_1157_c_6_25 27616 27930 - 4.A.3.2.2
TC Rep_1157_c_6 Rep_1157_c_6_26 28140 29900 - 3.A.1.135.6
TC Rep_1157_c_6 Rep_1157_c_6_27 29890 31656 - 3.A.1.135.6
Gene ID: Rep_1157_c_6_17
Type: TC
Location: 17873 - 20392 (-)
Gene ID: Rep_1157_c_6_18
Type: TC
Location: 20520 - 22367 (-)
Gene ID: Rep_1157_c_6_19
Type: pfam
Location: 22630 - 23574 (-)
Gene ID: Rep_1157_c_6_20
Type: TF
Location: 23605 - 24330 (-)
Gene ID: Rep_1157_c_6_21
Type: TC
Location: 24364 - 24819 (-)
Gene ID: Rep_1157_c_6_22
Type: TC
Location: 24857 - 25630 (-)
Gene ID: Rep_1157_c_6_23
Type: CAZyme
Location: 25754 - 27151 (+)
Gene ID: Rep_1157_c_6_24
Type: TC
Location: 27285 - 27605 (-)
Gene ID: Rep_1157_c_6_25
Type: TC
Location: 27616 - 27930 (-)
Gene ID: Rep_1157_c_6_26
Type: TC
Location: 28140 - 29900 (-)
Gene ID: Rep_1157_c_6_27
Type: TC
Location: 29890 - 31656 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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