Cluster: Rep_1153_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: Rep_1153
- CGC Family ID: CGCFAM_00311
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1153_c_0 | Rep_1153_c_0_19 | 16585 | 17508 | - | 3.A.1.1.29 |
| TC | Rep_1153_c_0 | Rep_1153_c_0_20 | 17522 | 18451 | - | 3.A.1.1.10 |
| pfam | Rep_1153_c_0 | Rep_1153_c_0_21 | 18661 | 19776 | - | DUF4767 |
| CAZyme | Rep_1153_c_0 | Rep_1153_c_0_22 | 19888 | 21768 | - | GH20 |
| pfam | Rep_1153_c_0 | Rep_1153_c_0_23 | 21762 | 22631 | - | ROK |
| CAZyme | Rep_1153_c_0 | Rep_1153_c_0_24 | 22728 | 25373 | - | GH38 |
| CAZyme | Rep_1153_c_0 | Rep_1153_c_0_25 | 25429 | 26709 | - | GH125 |
Gene ID: Rep_1153_c_0_19
Type: TC
Location: 16585 - 17508 (-)
Type: TC
Location: 16585 - 17508 (-)
Gene ID: Rep_1153_c_0_20
Type: TC
Location: 17522 - 18451 (-)
Type: TC
Location: 17522 - 18451 (-)
Gene ID: Rep_1153_c_0_21
Type: pfam
Location: 18661 - 19776 (-)
Type: pfam
Location: 18661 - 19776 (-)
Gene ID: Rep_1153_c_0_22
Type: CAZyme
Location: 19888 - 21768 (-)
Type: CAZyme
Location: 19888 - 21768 (-)
Gene ID: Rep_1153_c_0_23
Type: pfam
Location: 21762 - 22631 (-)
Type: pfam
Location: 21762 - 22631 (-)
Gene ID: Rep_1153_c_0_24
Type: CAZyme
Location: 22728 - 25373 (-)
Type: CAZyme
Location: 22728 - 25373 (-)
Gene ID: Rep_1153_c_0_25
Type: CAZyme
Location: 25429 - 26709 (-)
Type: CAZyme
Location: 25429 - 26709 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp900550895
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.