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Cluster: Rep_1153_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1153_c_80 Rep_1153_c_80_1 2 757 + 3.A.1.1.28
TC Rep_1153_c_80 Rep_1153_c_80_2 774 1280 + 3.A.1.1.28
TC Rep_1153_c_80 Rep_1153_c_80_3 1343 1606 + 3.A.1.1.28
CAZyme Rep_1153_c_80 Rep_1153_c_80_4 1813 2529 + GH13_18
CAZyme Rep_1153_c_80 Rep_1153_c_80_5 2587 3255 + GH13_18
TC Rep_1153_c_80 Rep_1153_c_80_6 3310 4581 + 9.B.67.1.2
TF Rep_1153_c_80 Rep_1153_c_80_7 4725 5168 + MarR
TC Rep_1153_c_80 Rep_1153_c_80_8 5241 5969 + 3.A.1.12.8
TC Rep_1153_c_80 Rep_1153_c_80_9 5962 7176 + 3.A.1.12.8
Gene ID: Rep_1153_c_80_1
Type: TC
Location: 2 - 757 (+)
Gene ID: Rep_1153_c_80_2
Type: TC
Location: 774 - 1280 (+)
Gene ID: Rep_1153_c_80_3
Type: TC
Location: 1343 - 1606 (+)
Gene ID: Rep_1153_c_80_4
Type: CAZyme
Location: 1813 - 2529 (+)
Gene ID: Rep_1153_c_80_5
Type: CAZyme
Location: 2587 - 3255 (+)
Gene ID: Rep_1153_c_80_6
Type: TC
Location: 3310 - 4581 (+)
Gene ID: Rep_1153_c_80_7
Type: TF
Location: 4725 - 5168 (+)
Gene ID: Rep_1153_c_80_8
Type: TC
Location: 5241 - 5969 (+)
Gene ID: Rep_1153_c_80_9
Type: TC
Location: 5962 - 7176 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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