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Cluster: Rep_1147_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1147_c_43 Rep_1147_c_43_29 22109 23389 - 2.A.66.1.34
STP Rep_1147_c_43 Rep_1147_c_43_30 23450 24934 - PALP
NULL(UNKNOWN) Rep_1147_c_43 Rep_1147_c_43_31 25010 26101 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1147_c_43 Rep_1147_c_43_32 26574 27431 - 3.A.1.1.26
TC Rep_1147_c_43 Rep_1147_c_43_33 27432 28730 - 3.A.1.1.26
CAZyme Rep_1147_c_43 Rep_1147_c_43_34 28757 30598 - CBM20 | GH13_2
CAZyme Rep_1147_c_43 Rep_1147_c_43_35 30886 32589 - CBM34 | GH13_20
TC Rep_1147_c_43 Rep_1147_c_43_36 32734 33981 - 3.A.1.1.26
sulfatase Rep_1147_c_43 Rep_1147_c_43_37 34179 35369 - S1_2
TC Rep_1147_c_43 Rep_1147_c_43_38 35566 36909 - 3.A.18.1.1
pfam Rep_1147_c_43 Rep_1147_c_43_39 37041 37856 - Exo_endo_phos
TC Rep_1147_c_43 Rep_1147_c_43_40 37908 40085 - 4.A.1.1.11
Gene ID: Rep_1147_c_43_29
Type: TC
Location: 22109 - 23389 (-)
Gene ID: Rep_1147_c_43_30
Type: STP
Location: 23450 - 24934 (-)
Gene ID: Rep_1147_c_43_31
Type:
Location: 25010 - 26101 (-)
Gene ID: Rep_1147_c_43_32
Type: TC
Location: 26574 - 27431 (-)
Gene ID: Rep_1147_c_43_33
Type: TC
Location: 27432 - 28730 (-)
Gene ID: Rep_1147_c_43_34
Type: CAZyme
Location: 28757 - 30598 (-)
Gene ID: Rep_1147_c_43_35
Type: CAZyme
Location: 30886 - 32589 (-)
Gene ID: Rep_1147_c_43_36
Type: TC
Location: 32734 - 33981 (-)
Gene ID: Rep_1147_c_43_37
Type: sulfatase
Location: 34179 - 35369 (-)
Gene ID: Rep_1147_c_43_38
Type: TC
Location: 35566 - 36909 (-)
Gene ID: Rep_1147_c_43_39
Type: pfam
Location: 37041 - 37856 (-)
Gene ID: Rep_1147_c_43_40
Type: TC
Location: 37908 - 40085 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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