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Cluster: Rep_1147_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1147_c_161 Rep_1147_c_161_4 1929 3908 + 3.A.1.5.25
TC Rep_1147_c_161 Rep_1147_c_161_5 3975 5471 + 3.A.1.5.10
TC Rep_1147_c_161 Rep_1147_c_161_6 5471 6397 + 3.A.1.5.10
TC Rep_1147_c_161 Rep_1147_c_161_7 6406 7473 + 3.A.1.5.25
TC Rep_1147_c_161 Rep_1147_c_161_8 7484 8413 + 3.A.1.5.19
TC Rep_1147_c_161 Rep_1147_c_161_9 8502 9941 - 2.A.38.1.6
TC Rep_1147_c_161 Rep_1147_c_161_10 9945 11294 - 2.A.38.1.1
pfam Rep_1147_c_161 Rep_1147_c_161_11 11700 12203 + SpoU_methylase
TC Rep_1147_c_161 Rep_1147_c_161_12 12628 13191 + 3.A.1.25.6
pfam Rep_1147_c_161 Rep_1147_c_161_13 13205 13831 + PAP2 | PAP2_3
pfam Rep_1147_c_161 Rep_1147_c_161_14 14058 14897 + PRD | PRD | CAT_RBD
TC Rep_1147_c_161 Rep_1147_c_161_15 14915 15865 + 4.A.1.2.3
TC Rep_1147_c_161 Rep_1147_c_161_16 15811 16749 + 4.A.1.2.11
CAZyme Rep_1147_c_161 Rep_1147_c_161_17 16762 18177 + GH1
Gene ID: Rep_1147_c_161_4
Type: TC
Location: 1929 - 3908 (+)
Gene ID: Rep_1147_c_161_5
Type: TC
Location: 3975 - 5471 (+)
Gene ID: Rep_1147_c_161_6
Type: TC
Location: 5471 - 6397 (+)
Gene ID: Rep_1147_c_161_7
Type: TC
Location: 6406 - 7473 (+)
Gene ID: Rep_1147_c_161_8
Type: TC
Location: 7484 - 8413 (+)
Gene ID: Rep_1147_c_161_9
Type: TC
Location: 8502 - 9941 (-)
Gene ID: Rep_1147_c_161_10
Type: TC
Location: 9945 - 11294 (-)
Gene ID: Rep_1147_c_161_11
Type: pfam
Location: 11700 - 12203 (+)
Gene ID: Rep_1147_c_161_12
Type: TC
Location: 12628 - 13191 (+)
Gene ID: Rep_1147_c_161_13
Type: pfam
Location: 13205 - 13831 (+)
Gene ID: Rep_1147_c_161_14
Type: pfam
Location: 14058 - 14897 (+)
Gene ID: Rep_1147_c_161_15
Type: TC
Location: 14915 - 15865 (+)
Gene ID: Rep_1147_c_161_16
Type: TC
Location: 15811 - 16749 (+)
Gene ID: Rep_1147_c_161_17
Type: CAZyme
Location: 16762 - 18177 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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