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Cluster: Rep_1144_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1144_c_42 Rep_1144_c_42_27 32434 34320 - 4.A.1.2.12
CAZyme Rep_1144_c_42 Rep_1144_c_42_28 34701 36155 + GH32
TF Rep_1144_c_42 Rep_1144_c_42_29 36136 37101 + LacI
TC Rep_1144_c_42 Rep_1144_c_42_30 37138 38412 - 2.A.6.6.11
pfam Rep_1144_c_42 Rep_1144_c_42_31 38412 39584 - Chal_sti_synt_N | HMG_CoA_synt_N | HMG_CoA_synt_C | HMG_CoA_synt_C
pfam Rep_1144_c_42 Rep_1144_c_42_32 39697 40146 - ThrE_2
TC Rep_1144_c_42 Rep_1144_c_42_33 40148 40906 - 2.A.79.1.5
TC Rep_1144_c_42 Rep_1144_c_42_34 40995 42893 - 9.B.106.2.2
Gene ID: Rep_1144_c_42_27
Type: TC
Location: 32434 - 34320 (-)
Gene ID: Rep_1144_c_42_28
Type: CAZyme
Location: 34701 - 36155 (+)
Gene ID: Rep_1144_c_42_29
Type: TF
Location: 36136 - 37101 (+)
Gene ID: Rep_1144_c_42_30
Type: TC
Location: 37138 - 38412 (-)
Gene ID: Rep_1144_c_42_31
Type: pfam
Location: 38412 - 39584 (-)
Gene ID: Rep_1144_c_42_32
Type: pfam
Location: 39697 - 40146 (-)
Gene ID: Rep_1144_c_42_33
Type: TC
Location: 40148 - 40906 (-)
Gene ID: Rep_1144_c_42_34
Type: TC
Location: 40995 - 42893 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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