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Cluster: Rep_1144_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1144_c_20 Rep_1144_c_20_1 371 2008 - 3.A.1.147.8
TC Rep_1144_c_20 Rep_1144_c_20_2 1989 2738 - 3.A.1.147.8
CAZyme Rep_1144_c_20 Rep_1144_c_20_3 2917 4371 + GH13_5
pfam Rep_1144_c_20 Rep_1144_c_20_4 4461 7079 - tRNA-synt_2c | DHHA1 | tRNA_SAD
pfam Rep_1144_c_20 Rep_1144_c_20_5 7101 7586 - LOR
TC Rep_1144_c_20 Rep_1144_c_20_6 8245 9315 - 3.A.1.11.7
TC Rep_1144_c_20 Rep_1144_c_20_7 9312 10085 - 3.A.1.11.7
TC Rep_1144_c_20 Rep_1144_c_20_8 10082 10888 - 3.A.1.11.7
TC Rep_1144_c_20 Rep_1144_c_20_9 10869 12026 - 3.A.1.11.7
Gene ID: Rep_1144_c_20_1
Type: TC
Location: 371 - 2008 (-)
Gene ID: Rep_1144_c_20_2
Type: TC
Location: 1989 - 2738 (-)
Gene ID: Rep_1144_c_20_3
Type: CAZyme
Location: 2917 - 4371 (+)
Gene ID: Rep_1144_c_20_4
Type: pfam
Location: 4461 - 7079 (-)
Gene ID: Rep_1144_c_20_5
Type: pfam
Location: 7101 - 7586 (-)
Gene ID: Rep_1144_c_20_6
Type: TC
Location: 8245 - 9315 (-)
Gene ID: Rep_1144_c_20_7
Type: TC
Location: 9312 - 10085 (-)
Gene ID: Rep_1144_c_20_8
Type: TC
Location: 10082 - 10888 (-)
Gene ID: Rep_1144_c_20_9
Type: TC
Location: 10869 - 12026 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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