Cluster: Rep_1142_CGC9
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_1142
- CGC Family ID: CGCFAM_00401
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1142_c_2 | Rep_1142_c_2_12 | 9545 | 10189 | - | 9.B.28.1.4 |
| pfam | Rep_1142_c_2 | Rep_1142_c_2_13 | 10209 | 10661 | - | DUF386 |
| TC | Rep_1142_c_2 | Rep_1142_c_2_14 | 10889 | 11728 | - | 3.A.1.1.34 |
| TC | Rep_1142_c_2 | Rep_1142_c_2_15 | 11744 | 12631 | - | 3.A.1.1.20 |
| STP | Rep_1142_c_2 | Rep_1142_c_2_16 | 12832 | 14160 | - | SBP_bac_1 |
| pfam | Rep_1142_c_2 | Rep_1142_c_2_17 | 14275 | 14973 | - | NanE |
| CAZyme | Rep_1142_c_2 | Rep_1142_c_2_18 | 15146 | 16249 | - | GH177 |
| CAZyme | Rep_1142_c_2 | Rep_1142_c_2_19 | 16261 | 18354 | - | CBM40 | GH33 |
| TC | Rep_1142_c_2 | Rep_1142_c_2_20 | 18371 | 19204 | - | 3.A.1.1.25 |
| TC | Rep_1142_c_2 | Rep_1142_c_2_21 | 19204 | 20088 | - | 3.A.1.1.25 |
| STP | Rep_1142_c_2 | Rep_1142_c_2_22 | 20167 | 21504 | - | SBP_bac_1 |
| pfam | Rep_1142_c_2 | Rep_1142_c_2_23 | 21523 | 21975 | - | DUF386 |
| CAZyme | Rep_1142_c_2 | Rep_1142_c_2_24 | 22504 | 26382 | - | CBM40 | GH33 |
| CAZyme | Rep_1142_c_2 | Rep_1142_c_2_25 | 26692 | 27672 | - | CE7 |
Gene ID: Rep_1142_c_2_12
Type: TC
Location: 9545 - 10189 (-)
Type: TC
Location: 9545 - 10189 (-)
Gene ID: Rep_1142_c_2_13
Type: pfam
Location: 10209 - 10661 (-)
Type: pfam
Location: 10209 - 10661 (-)
Gene ID: Rep_1142_c_2_14
Type: TC
Location: 10889 - 11728 (-)
Type: TC
Location: 10889 - 11728 (-)
Gene ID: Rep_1142_c_2_15
Type: TC
Location: 11744 - 12631 (-)
Type: TC
Location: 11744 - 12631 (-)
Gene ID: Rep_1142_c_2_16
Type: STP
Location: 12832 - 14160 (-)
Type: STP
Location: 12832 - 14160 (-)
Gene ID: Rep_1142_c_2_17
Type: pfam
Location: 14275 - 14973 (-)
Type: pfam
Location: 14275 - 14973 (-)
Gene ID: Rep_1142_c_2_18
Type: CAZyme
Location: 15146 - 16249 (-)
Type: CAZyme
Location: 15146 - 16249 (-)
Gene ID: Rep_1142_c_2_19
Type: CAZyme
Location: 16261 - 18354 (-)
Type: CAZyme
Location: 16261 - 18354 (-)
Gene ID: Rep_1142_c_2_20
Type: TC
Location: 18371 - 19204 (-)
Type: TC
Location: 18371 - 19204 (-)
Gene ID: Rep_1142_c_2_21
Type: TC
Location: 19204 - 20088 (-)
Type: TC
Location: 19204 - 20088 (-)
Gene ID: Rep_1142_c_2_22
Type: STP
Location: 20167 - 21504 (-)
Type: STP
Location: 20167 - 21504 (-)
Gene ID: Rep_1142_c_2_23
Type: pfam
Location: 21523 - 21975 (-)
Type: pfam
Location: 21523 - 21975 (-)
Gene ID: Rep_1142_c_2_24
Type: CAZyme
Location: 22504 - 26382 (-)
Type: CAZyme
Location: 22504 - 26382 (-)
Gene ID: Rep_1142_c_2_25
Type: CAZyme
Location: 26692 - 27672 (-)
Type: CAZyme
Location: 26692 - 27672 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus mitis_CB
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.