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Cluster: Rep_1142_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1142_c_1 Rep_1142_c_1_178 185613 186437 + CE1
peptidase Rep_1142_c_1 Rep_1142_c_1_179 186458 187198 + S09.UPW
pfam Rep_1142_c_1 Rep_1142_c_1_180 187211 188377 + CPSase_L_D2 | ATP-grasp_4
TC Rep_1142_c_1 Rep_1142_c_1_181 188536 189441 + 1.A.8.2.2
pfam Rep_1142_c_1 Rep_1142_c_1_182 189565 190290 + CppA_N | CppA_C
peptidase Rep_1142_c_1 Rep_1142_c_1_183 190287 191222 + S12.950
TC Rep_1142_c_1 Rep_1142_c_1_184 191231 192127 + 2.A.7.3.31
Gene ID: Rep_1142_c_1_178
Type: CAZyme
Location: 185613 - 186437 (+)
Gene ID: Rep_1142_c_1_179
Type: peptidase
Location: 186458 - 187198 (+)
Gene ID: Rep_1142_c_1_180
Type: pfam
Location: 187211 - 188377 (+)
Gene ID: Rep_1142_c_1_181
Type: TC
Location: 188536 - 189441 (+)
Gene ID: Rep_1142_c_1_182
Type: pfam
Location: 189565 - 190290 (+)
Gene ID: Rep_1142_c_1_183
Type: peptidase
Location: 190287 - 191222 (+)
Gene ID: Rep_1142_c_1_184
Type: TC
Location: 191231 - 192127 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1142_c_1_180 vegan > omnivore 2.79102 0.01188

🧭 Explore Read Mapping of CGC

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