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Cluster: Rep_1142_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1142_c_1 Rep_1142_c_1_131 136342 137502 + 3.A.1.4.10
TC Rep_1142_c_1 Rep_1142_c_1_132 137723 138592 + 3.A.1.4.10
TC Rep_1142_c_1 Rep_1142_c_1_133 138596 139552 + 3.A.1.4.10
TC Rep_1142_c_1 Rep_1142_c_1_134 139552 140316 + 3.A.1.4.10
TC Rep_1142_c_1 Rep_1142_c_1_135 140316 141026 + 3.A.1.4.10
STP Rep_1142_c_1 Rep_1142_c_1_136 141385 142041 + CBS | CBS
pfam Rep_1142_c_1 Rep_1142_c_1_137 142267 143244 + RF-1 | PCRF
TC Rep_1142_c_1 Rep_1142_c_1_138 143262 143954 + 3.A.1.140.1
pfam Rep_1142_c_1 Rep_1142_c_1_139 143947 144873 + FtsX | FtsX_ECD
TC Rep_1142_c_1 Rep_1142_c_1_140 145058 147238 + 4.A.1.1.11
pfam Rep_1142_c_1 Rep_1142_c_1_141 147290 148105 + Exo_endo_phos
TC Rep_1142_c_1 Rep_1142_c_1_142 148245 149588 + 3.A.18.1.1
sulfatase Rep_1142_c_1 Rep_1142_c_1_143 149958 151148 + S1_2
CAZyme Rep_1142_c_1 Rep_1142_c_1_144 151238 152629 + CE4
TC Rep_1142_c_1 Rep_1142_c_1_145 152706 153548 + 8.A.5.1.4
Gene ID: Rep_1142_c_1_131
Type: TC
Location: 136342 - 137502 (+)
Gene ID: Rep_1142_c_1_132
Type: TC
Location: 137723 - 138592 (+)
Gene ID: Rep_1142_c_1_133
Type: TC
Location: 138596 - 139552 (+)
Gene ID: Rep_1142_c_1_134
Type: TC
Location: 139552 - 140316 (+)
Gene ID: Rep_1142_c_1_135
Type: TC
Location: 140316 - 141026 (+)
Gene ID: Rep_1142_c_1_136
Type: STP
Location: 141385 - 142041 (+)
Gene ID: Rep_1142_c_1_137
Type: pfam
Location: 142267 - 143244 (+)
Gene ID: Rep_1142_c_1_138
Type: TC
Location: 143262 - 143954 (+)
Gene ID: Rep_1142_c_1_139
Type: pfam
Location: 143947 - 144873 (+)
Gene ID: Rep_1142_c_1_140
Type: TC
Location: 145058 - 147238 (+)
Gene ID: Rep_1142_c_1_141
Type: pfam
Location: 147290 - 148105 (+)
Gene ID: Rep_1142_c_1_142
Type: TC
Location: 148245 - 149588 (+)
Gene ID: Rep_1142_c_1_143
Type: sulfatase
Location: 149958 - 151148 (+)
Gene ID: Rep_1142_c_1_144
Type: CAZyme
Location: 151238 - 152629 (+)
Gene ID: Rep_1142_c_1_145
Type: TC
Location: 152706 - 153548 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1142_c_1_135 vegan > omnivore 1.65773 0.01188

🧭 Explore Read Mapping of CGC

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