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Cluster: Rep_1142_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1142_c_15 Rep_1142_c_15_77 105767 107704 - 4.A.1.2.12
CAZyme Rep_1142_c_15 Rep_1142_c_15_78 108086 109540 + GH32
TF Rep_1142_c_15 Rep_1142_c_15_79 109521 110486 + LacI
TC Rep_1142_c_15 Rep_1142_c_15_80 110522 111796 - 2.A.6.6.11
pfam Rep_1142_c_15 Rep_1142_c_15_81 111796 112968 - Chal_sti_synt_N | HMG_CoA_synt_N | HMG_CoA_synt_C | HMG_CoA_synt_C
pfam Rep_1142_c_15 Rep_1142_c_15_82 113082 113531 - ThrE_2
TC Rep_1142_c_15 Rep_1142_c_15_83 113533 114291 - 2.A.79.1.5
TC Rep_1142_c_15 Rep_1142_c_15_84 114381 116282 - 9.B.106.2.2
Gene ID: Rep_1142_c_15_77
Type: TC
Location: 105767 - 107704 (-)
Gene ID: Rep_1142_c_15_78
Type: CAZyme
Location: 108086 - 109540 (+)
Gene ID: Rep_1142_c_15_79
Type: TF
Location: 109521 - 110486 (+)
Gene ID: Rep_1142_c_15_80
Type: TC
Location: 110522 - 111796 (-)
Gene ID: Rep_1142_c_15_81
Type: pfam
Location: 111796 - 112968 (-)
Gene ID: Rep_1142_c_15_82
Type: pfam
Location: 113082 - 113531 (-)
Gene ID: Rep_1142_c_15_83
Type: TC
Location: 113533 - 114291 (-)
Gene ID: Rep_1142_c_15_84
Type: TC
Location: 114381 - 116282 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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