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Cluster: Rep_1142_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1142_c_14 Rep_1142_c_14_82 85862 86566 + 3.A.1.15.3
TC Rep_1142_c_14 Rep_1142_c_14_83 86559 87365 + 3.A.1.15.3
TC Rep_1142_c_14 Rep_1142_c_14_84 87375 88880 + 3.A.1.15.3
pfam Rep_1142_c_14 Rep_1142_c_14_85 89501 90652 + Fe-ADH | Fe-ADH_2 | ADH_Fe_C
peptidase Rep_1142_c_14 Rep_1142_c_14_86 90784 91686 + I87.UPW
CAZyme Rep_1142_c_14 Rep_1142_c_14_87 91870 95646 + CBM71 | GH2
CAZyme Rep_1142_c_14 Rep_1142_c_14_88 95648 97330 + GH29
CAZyme Rep_1142_c_14 Rep_1142_c_14_89 97376 99460 - GH92
CAZyme Rep_1142_c_14 Rep_1142_c_14_90 99631 100911 + GH125
CAZyme Rep_1142_c_14 Rep_1142_c_14_91 101009 103654 + GH38
pfam Rep_1142_c_14 Rep_1142_c_14_92 103726 104607 + ROK
CAZyme Rep_1142_c_14 Rep_1142_c_14_93 104601 106481 + GH20
TC Rep_1142_c_14 Rep_1142_c_14_94 106691 107620 + 3.A.1.1.10
TC Rep_1142_c_14 Rep_1142_c_14_95 107634 108557 + 3.A.1.1.29
Gene ID: Rep_1142_c_14_82
Type: TC
Location: 85862 - 86566 (+)
Gene ID: Rep_1142_c_14_83
Type: TC
Location: 86559 - 87365 (+)
Gene ID: Rep_1142_c_14_84
Type: TC
Location: 87375 - 88880 (+)
Gene ID: Rep_1142_c_14_85
Type: pfam
Location: 89501 - 90652 (+)
Gene ID: Rep_1142_c_14_86
Type: peptidase
Location: 90784 - 91686 (+)
Gene ID: Rep_1142_c_14_87
Type: CAZyme
Location: 91870 - 95646 (+)
Gene ID: Rep_1142_c_14_88
Type: CAZyme
Location: 95648 - 97330 (+)
Gene ID: Rep_1142_c_14_89
Type: CAZyme
Location: 97376 - 99460 (-)
Gene ID: Rep_1142_c_14_90
Type: CAZyme
Location: 99631 - 100911 (+)
Gene ID: Rep_1142_c_14_91
Type: CAZyme
Location: 101009 - 103654 (+)
Gene ID: Rep_1142_c_14_92
Type: pfam
Location: 103726 - 104607 (+)
Gene ID: Rep_1142_c_14_93
Type: CAZyme
Location: 104601 - 106481 (+)
Gene ID: Rep_1142_c_14_94
Type: TC
Location: 106691 - 107620 (+)
Gene ID: Rep_1142_c_14_95
Type: TC
Location: 107634 - 108557 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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