Cluster: Rep_1142_CGC16
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_1142
- CGC Family ID: CGCFAM_02339
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1142_c_12 | Rep_1142_c_12_161 | 176601 | 178151 | - | 2.A.49.5.1 |
| pfam | Rep_1142_c_12 | Rep_1142_c_12_162 | 178414 | 178947 | - | RNase_HII |
| pfam | Rep_1142_c_12 | Rep_1142_c_12_163 | 178934 | 179785 | - | MMR_HSR1 | FeoB_N |
| CAZyme | Rep_1142_c_12 | Rep_1142_c_12_164 | 180021 | 181130 | - | GT4 |
| NULL(UNKNOWN) | Rep_1142_c_12 | Rep_1142_c_12_165 | 181127 | 182692 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1142_c_12 | Rep_1142_c_12_166 | 182693 | 183655 | - | GT32 |
| CAZyme | Rep_1142_c_12 | Rep_1142_c_12_167 | 183661 | 184656 | - | GT113 |
| CAZyme | Rep_1142_c_12 | Rep_1142_c_12_168 | 184658 | 185632 | - | GT2 |
| CAZyme | Rep_1142_c_12 | Rep_1142_c_12_169 | 185646 | 186605 | - | GT2 |
| CAZyme | Rep_1142_c_12 | Rep_1142_c_12_170 | 186598 | 187608 | - | GT2 |
| CAZyme | Rep_1142_c_12 | Rep_1142_c_12_171 | 187648 | 188613 | - | GT2 |
| pfam | Rep_1142_c_12 | Rep_1142_c_12_172 | 188628 | 189737 | - | Glyphos_transf |
| CAZyme | Rep_1142_c_12 | Rep_1142_c_12_173 | 189734 | 190813 | - | GT4 |
| pfam | Rep_1142_c_12 | Rep_1142_c_12_174 | 190815 | 191213 | - | CTP_transf_like |
| CAZyme | Rep_1142_c_12 | Rep_1142_c_12_175 | 191210 | 192043 | - | GT2 |
| pfam | Rep_1142_c_12 | Rep_1142_c_12_176 | 192060 | 193160 | - | EpsG |
| TC | Rep_1142_c_12 | Rep_1142_c_12_177 | 193191 | 193844 | - | 8.A.3.2.1 |
| NULL(UNKNOWN) | Rep_1142_c_12 | Rep_1142_c_12_178 | 193846 | 194550 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1142_c_12 | Rep_1142_c_12_179 | 194593 | 195168 | - | 9.B.18.1.3 |
Gene ID: Rep_1142_c_12_161
Type: TC
Location: 176601 - 178151 (-)
Type: TC
Location: 176601 - 178151 (-)
Gene ID: Rep_1142_c_12_162
Type: pfam
Location: 178414 - 178947 (-)
Type: pfam
Location: 178414 - 178947 (-)
Gene ID: Rep_1142_c_12_163
Type: pfam
Location: 178934 - 179785 (-)
Type: pfam
Location: 178934 - 179785 (-)
Gene ID: Rep_1142_c_12_164
Type: CAZyme
Location: 180021 - 181130 (-)
Type: CAZyme
Location: 180021 - 181130 (-)
Gene ID: Rep_1142_c_12_165
Type:
Location: 181127 - 182692 (-)
Type:
Location: 181127 - 182692 (-)
Gene ID: Rep_1142_c_12_166
Type: CAZyme
Location: 182693 - 183655 (-)
Type: CAZyme
Location: 182693 - 183655 (-)
Gene ID: Rep_1142_c_12_167
Type: CAZyme
Location: 183661 - 184656 (-)
Type: CAZyme
Location: 183661 - 184656 (-)
Gene ID: Rep_1142_c_12_168
Type: CAZyme
Location: 184658 - 185632 (-)
Type: CAZyme
Location: 184658 - 185632 (-)
Gene ID: Rep_1142_c_12_169
Type: CAZyme
Location: 185646 - 186605 (-)
Type: CAZyme
Location: 185646 - 186605 (-)
Gene ID: Rep_1142_c_12_170
Type: CAZyme
Location: 186598 - 187608 (-)
Type: CAZyme
Location: 186598 - 187608 (-)
Gene ID: Rep_1142_c_12_171
Type: CAZyme
Location: 187648 - 188613 (-)
Type: CAZyme
Location: 187648 - 188613 (-)
Gene ID: Rep_1142_c_12_172
Type: pfam
Location: 188628 - 189737 (-)
Type: pfam
Location: 188628 - 189737 (-)
Gene ID: Rep_1142_c_12_173
Type: CAZyme
Location: 189734 - 190813 (-)
Type: CAZyme
Location: 189734 - 190813 (-)
Gene ID: Rep_1142_c_12_174
Type: pfam
Location: 190815 - 191213 (-)
Type: pfam
Location: 190815 - 191213 (-)
Gene ID: Rep_1142_c_12_175
Type: CAZyme
Location: 191210 - 192043 (-)
Type: CAZyme
Location: 191210 - 192043 (-)
Gene ID: Rep_1142_c_12_176
Type: pfam
Location: 192060 - 193160 (-)
Type: pfam
Location: 192060 - 193160 (-)
Gene ID: Rep_1142_c_12_177
Type: TC
Location: 193191 - 193844 (-)
Type: TC
Location: 193191 - 193844 (-)
Gene ID: Rep_1142_c_12_178
Type:
Location: 193846 - 194550 (-)
Type:
Location: 193846 - 194550 (-)
Gene ID: Rep_1142_c_12_179
Type: TC
Location: 194593 - 195168 (-)
Type: TC
Location: 194593 - 195168 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus mitis_CB
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.