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Cluster: Rep_1142_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1142_c_6 Rep_1142_c_6_22 21296 22276 + 9.B.146.1.6
NULL(UNKNOWN) Rep_1142_c_6 Rep_1142_c_6_23 22443 22532 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1142_c_6 Rep_1142_c_6_24 22615 24720 + 3.A.9.1.2
pfam Rep_1142_c_6 Rep_1142_c_6_25 24784 25266 - LuxS
pfam Rep_1142_c_6 Rep_1142_c_6_26 25361 26845 - DUF1846 | DUF1846_C
CAZyme Rep_1142_c_6 Rep_1142_c_6_27 26998 28608 + GH13_31
TC Rep_1142_c_6 Rep_1142_c_6_28 28776 30743 + 3.A.1.5.19
TC Rep_1142_c_6 Rep_1142_c_6_29 30970 32928 + 3.A.1.5.19
Gene ID: Rep_1142_c_6_22
Type: TC
Location: 21296 - 22276 (+)
Gene ID: Rep_1142_c_6_23
Type:
Location: 22443 - 22532 (+)
Gene ID: Rep_1142_c_6_24
Type: TC
Location: 22615 - 24720 (+)
Gene ID: Rep_1142_c_6_25
Type: pfam
Location: 24784 - 25266 (-)
Gene ID: Rep_1142_c_6_26
Type: pfam
Location: 25361 - 26845 (-)
Gene ID: Rep_1142_c_6_27
Type: CAZyme
Location: 26998 - 28608 (+)
Gene ID: Rep_1142_c_6_28
Type: TC
Location: 28776 - 30743 (+)
Gene ID: Rep_1142_c_6_29
Type: TC
Location: 30970 - 32928 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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