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Cluster: Rep_1142_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1142_c_5 Rep_1142_c_5_35 35623 37257 - 3.A.1.147.8
TC Rep_1142_c_5 Rep_1142_c_5_36 37238 37987 - 3.A.1.147.8
CAZyme Rep_1142_c_5 Rep_1142_c_5_37 38165 39619 + GH13_5
pfam Rep_1142_c_5 Rep_1142_c_5_38 39709 42327 - tRNA-synt_2c | DHHA1 | tRNA_SAD
pfam Rep_1142_c_5 Rep_1142_c_5_39 42349 42834 - LOR
TC Rep_1142_c_5 Rep_1142_c_5_40 43093 44163 - 3.A.1.11.7
TC Rep_1142_c_5 Rep_1142_c_5_41 44160 44933 - 3.A.1.11.7
TC Rep_1142_c_5 Rep_1142_c_5_42 44930 45736 - 3.A.1.11.7
TC Rep_1142_c_5 Rep_1142_c_5_43 45717 46874 - 3.A.1.11.7
Gene ID: Rep_1142_c_5_35
Type: TC
Location: 35623 - 37257 (-)
Gene ID: Rep_1142_c_5_36
Type: TC
Location: 37238 - 37987 (-)
Gene ID: Rep_1142_c_5_37
Type: CAZyme
Location: 38165 - 39619 (+)
Gene ID: Rep_1142_c_5_38
Type: pfam
Location: 39709 - 42327 (-)
Gene ID: Rep_1142_c_5_39
Type: pfam
Location: 42349 - 42834 (-)
Gene ID: Rep_1142_c_5_40
Type: TC
Location: 43093 - 44163 (-)
Gene ID: Rep_1142_c_5_41
Type: TC
Location: 44160 - 44933 (-)
Gene ID: Rep_1142_c_5_42
Type: TC
Location: 44930 - 45736 (-)
Gene ID: Rep_1142_c_5_43
Type: TC
Location: 45717 - 46874 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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