Cluster: Rep_112_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_112
- CGC Family ID: CGCFAM_00028
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_112_c_54 | Rep_112_c_54_2 | 1267 | 2601 | - | GH57 |
| CAZyme | Rep_112_c_54 | Rep_112_c_54_3 | 2655 | 3917 | - | GT4 |
| CAZyme | Rep_112_c_54 | Rep_112_c_54_4 | 3946 | 6090 | - | GH133 |
| pfam | Rep_112_c_54 | Rep_112_c_54_5 | 6952 | 7401 | - | ATP-synt_C | ATP-synt_C |
| TC | Rep_112_c_54 | Rep_112_c_54_6 | 7451 | 8092 | - | 3.A.2.3.3 |
Gene ID: Rep_112_c_54_2
Type: CAZyme
Location: 1267 - 2601 (-)
Type: CAZyme
Location: 1267 - 2601 (-)
Gene ID: Rep_112_c_54_3
Type: CAZyme
Location: 2655 - 3917 (-)
Type: CAZyme
Location: 2655 - 3917 (-)
Gene ID: Rep_112_c_54_4
Type: CAZyme
Location: 3946 - 6090 (-)
Type: CAZyme
Location: 3946 - 6090 (-)
Gene ID: Rep_112_c_54_5
Type: pfam
Location: 6952 - 7401 (-)
Type: pfam
Location: 6952 - 7401 (-)
Gene ID: Rep_112_c_54_6
Type: TC
Location: 7451 - 8092 (-)
Type: TC
Location: 7451 - 8092 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp001808555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.