Cluster: Rep_112_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_112
- CGC Family ID: CGCFAM_06315
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_112_c_25 | Rep_112_c_25_7 | 6395 | 7654 | + | 9.A.40.2.4 |
| pfam | Rep_112_c_25 | Rep_112_c_25_8 | 7676 | 9427 | + | tRNA-synt_2 | tRNA_anti-codon | GAD |
| CAZyme | Rep_112_c_25 | Rep_112_c_25_9 | 9506 | 12001 | + | GH2 |
| TC | Rep_112_c_25 | Rep_112_c_25_10 | 11988 | 12740 | + | 9.B.158.1.3 |
| pfam | Rep_112_c_25 | Rep_112_c_25_11 | 12737 | 13462 | + | 2-ph_phosp |
| CAZyme | Rep_112_c_25 | Rep_112_c_25_12 | 13469 | 14473 | + | GH73 |
Gene ID: Rep_112_c_25_7
Type: TC
Location: 6395 - 7654 (+)
Type: TC
Location: 6395 - 7654 (+)
Gene ID: Rep_112_c_25_8
Type: pfam
Location: 7676 - 9427 (+)
Type: pfam
Location: 7676 - 9427 (+)
Gene ID: Rep_112_c_25_9
Type: CAZyme
Location: 9506 - 12001 (+)
Type: CAZyme
Location: 9506 - 12001 (+)
Gene ID: Rep_112_c_25_10
Type: TC
Location: 11988 - 12740 (+)
Type: TC
Location: 11988 - 12740 (+)
Gene ID: Rep_112_c_25_11
Type: pfam
Location: 12737 - 13462 (+)
Type: pfam
Location: 12737 - 13462 (+)
Gene ID: Rep_112_c_25_12
Type: CAZyme
Location: 13469 - 14473 (+)
Type: CAZyme
Location: 13469 - 14473 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp001808555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.