Cluster: Rep_112_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_112
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_112_c_167 | Rep_112_c_167_8 | 7615 | 9018 | + | 2.A.103.1.3 |
| CAZyme | Rep_112_c_167 | Rep_112_c_167_9 | 9029 | 10165 | + | GT28 |
| pfam | Rep_112_c_167 | Rep_112_c_167_10 | 10152 | 11552 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| NULL(UNKNOWN) | Rep_112_c_167 | Rep_112_c_167_11 | 11564 | 12325 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_112_c_167 | Rep_112_c_167_12 | 12304 | 13338 | + | 2.A.4.7.9 |
Gene ID: Rep_112_c_167_8
Type: TC
Location: 7615 - 9018 (+)
Type: TC
Location: 7615 - 9018 (+)
Gene ID: Rep_112_c_167_9
Type: CAZyme
Location: 9029 - 10165 (+)
Type: CAZyme
Location: 9029 - 10165 (+)
Gene ID: Rep_112_c_167_10
Type: pfam
Location: 10152 - 11552 (+)
Type: pfam
Location: 10152 - 11552 (+)
Gene ID: Rep_112_c_167_11
Type:
Location: 11564 - 12325 (+)
Type:
Location: 11564 - 12325 (+)
Gene ID: Rep_112_c_167_12
Type: TC
Location: 12304 - 13338 (+)
Type: TC
Location: 12304 - 13338 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp001808555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.