Cluster: Rep_112_CGC16
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_112
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_112_c_127 | Rep_112_c_127_1 | 110 | 2512 | - | 1.B.14.6.5 |
| pfam | Rep_112_c_127 | Rep_112_c_127_2 | 2780 | 3838 | + | LPG_synthase_TM |
| CAZyme | Rep_112_c_127 | Rep_112_c_127_3 | 3871 | 5037 | + | GT4 |
Gene ID: Rep_112_c_127_1
Type: TC
Location: 110 - 2512 (-)
Type: TC
Location: 110 - 2512 (-)
Gene ID: Rep_112_c_127_2
Type: pfam
Location: 2780 - 3838 (+)
Type: pfam
Location: 2780 - 3838 (+)
Gene ID: Rep_112_c_127_3
Type: CAZyme
Location: 3871 - 5037 (+)
Type: CAZyme
Location: 3871 - 5037 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp001808555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.