Cluster: Rep_112_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_112
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_112_c_125 | Rep_112_c_125_1 | 319 | 2037 | + | CBM50 |
| pfam | Rep_112_c_125 | Rep_112_c_125_2 | 2037 | 2714 | + | OMP_b-brl_2 |
| STP | Rep_112_c_125 | Rep_112_c_125_3 | 2733 | 3557 | + | Peripla_BP_2 |
| TC | Rep_112_c_125 | Rep_112_c_125_4 | 3564 | 4568 | + | 3.A.1.14.5 |
| TC | Rep_112_c_125 | Rep_112_c_125_5 | 4565 | 5350 | + | 3.A.1.14.3 |
Gene ID: Rep_112_c_125_1
Type: CAZyme
Location: 319 - 2037 (+)
Type: CAZyme
Location: 319 - 2037 (+)
Gene ID: Rep_112_c_125_2
Type: pfam
Location: 2037 - 2714 (+)
Type: pfam
Location: 2037 - 2714 (+)
Gene ID: Rep_112_c_125_3
Type: STP
Location: 2733 - 3557 (+)
Type: STP
Location: 2733 - 3557 (+)
Gene ID: Rep_112_c_125_4
Type: TC
Location: 3564 - 4568 (+)
Type: TC
Location: 3564 - 4568 (+)
Gene ID: Rep_112_c_125_5
Type: TC
Location: 4565 - 5350 (+)
Type: TC
Location: 4565 - 5350 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp001808555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.