Cluster: Rep_112_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_112
- CGC Family ID: CGCFAM_01519
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_112_c_77 | Rep_112_c_77_2 | 1312 | 2271 | + | 3.A.5.1.1 |
| pfam | Rep_112_c_77 | Rep_112_c_77_3 | 2283 | 3587 | + | UPF0004 | TRAM | Radical_SAM | TRAM_2 |
| CAZyme | Rep_112_c_77 | Rep_112_c_77_4 | 3584 | 5860 | + | GH92 |
Gene ID: Rep_112_c_77_2
Type: TC
Location: 1312 - 2271 (+)
Type: TC
Location: 1312 - 2271 (+)
Gene ID: Rep_112_c_77_3
Type: pfam
Location: 2283 - 3587 (+)
Type: pfam
Location: 2283 - 3587 (+)
Gene ID: Rep_112_c_77_4
Type: CAZyme
Location: 3584 - 5860 (+)
Type: CAZyme
Location: 3584 - 5860 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp001808555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.