Cluster: Rep_112_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_112
- CGC Family ID: CGCFAM_06312
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_112_c_6 | Rep_112_c_6_3 | 4358 | 6598 | + | GH89 |
| pfam | Rep_112_c_6 | Rep_112_c_6_4 | 6672 | 6839 | + | TatA_B_E |
| TC | Rep_112_c_6 | Rep_112_c_6_5 | 6814 | 7632 | + | 2.A.64.2.1 |
Gene ID: Rep_112_c_6_3
Type: CAZyme
Location: 4358 - 6598 (+)
Type: CAZyme
Location: 4358 - 6598 (+)
Gene ID: Rep_112_c_6_4
Type: pfam
Location: 6672 - 6839 (+)
Type: pfam
Location: 6672 - 6839 (+)
Gene ID: Rep_112_c_6_5
Type: TC
Location: 6814 - 7632 (+)
Type: TC
Location: 6814 - 7632 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas_A
Species
Porphyromonas_A sp001808555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.