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Cluster: Rep_1125_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1125_c_2 Rep_1125_c_2_136 139989 140537 - 2.A.88.5.1
TF Rep_1125_c_2 Rep_1125_c_2_137 140714 141235 - HTH_11
pfam Rep_1125_c_2 Rep_1125_c_2_138 141411 142103 - His_Phos_1 | His_Phos_1
TC Rep_1125_c_2 Rep_1125_c_2_139 142478 144361 - 3.A.3.6.10
TF Rep_1125_c_2 Rep_1125_c_2_140 144364 144678 - HTH_5
pfam Rep_1125_c_2 Rep_1125_c_2_141 145001 145936 + DHO_dh
TC Rep_1125_c_2 Rep_1125_c_2_142 146046 147617 - 2.A.17.1.1
NULL(UNKNOWN) Rep_1125_c_2 Rep_1125_c_2_143 147954 148151 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1125_c_2 Rep_1125_c_2_144 148658 149683 - GH25
Gene ID: Rep_1125_c_2_136
Type: TC
Location: 139989 - 140537 (-)
Gene ID: Rep_1125_c_2_137
Type: TF
Location: 140714 - 141235 (-)
Gene ID: Rep_1125_c_2_138
Type: pfam
Location: 141411 - 142103 (-)
Gene ID: Rep_1125_c_2_139
Type: TC
Location: 142478 - 144361 (-)
Gene ID: Rep_1125_c_2_140
Type: TF
Location: 144364 - 144678 (-)
Gene ID: Rep_1125_c_2_141
Type: pfam
Location: 145001 - 145936 (+)
Gene ID: Rep_1125_c_2_142
Type: TC
Location: 146046 - 147617 (-)
Gene ID: Rep_1125_c_2_143
Type:
Location: 147954 - 148151 (-)
Gene ID: Rep_1125_c_2_144
Type: CAZyme
Location: 148658 - 149683 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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