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Cluster: Rep_1125_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1125_c_0 Rep_1125_c_0_415 408069 409223 + GT4
CAZyme Rep_1125_c_0 Rep_1125_c_0_416 409213 410148 + GT2
pfam Rep_1125_c_0 Rep_1125_c_0_417 410145 410951 + ABC2_membrane
TC Rep_1125_c_0 Rep_1125_c_0_418 410951 412159 + 3.A.1.103.5
CAZyme Rep_1125_c_0 Rep_1125_c_0_419 412187 413203 + GT2
pfam Rep_1125_c_0 Rep_1125_c_0_420 413200 414897 + RgpF
CAZyme Rep_1125_c_0 Rep_1125_c_0_421 414894 415688 + GT2
CAZyme Rep_1125_c_0 Rep_1125_c_0_422 415700 416395 + GT2
Gene ID: Rep_1125_c_0_415
Type: CAZyme
Location: 408069 - 409223 (+)
Gene ID: Rep_1125_c_0_416
Type: CAZyme
Location: 409213 - 410148 (+)
Gene ID: Rep_1125_c_0_417
Type: pfam
Location: 410145 - 410951 (+)
Gene ID: Rep_1125_c_0_418
Type: TC
Location: 410951 - 412159 (+)
Gene ID: Rep_1125_c_0_419
Type: CAZyme
Location: 412187 - 413203 (+)
Gene ID: Rep_1125_c_0_420
Type: pfam
Location: 413200 - 414897 (+)
Gene ID: Rep_1125_c_0_421
Type: CAZyme
Location: 414894 - 415688 (+)
Gene ID: Rep_1125_c_0_422
Type: CAZyme
Location: 415700 - 416395 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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