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Cluster: Rep_1125_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1125_c_0 Rep_1125_c_0_393 382540 383754 - 3.A.1.121.2
pfam Rep_1125_c_0 Rep_1125_c_0_394 383703 384041 - ABC_tran
pfam Rep_1125_c_0 Rep_1125_c_0_395 384273 384857 - Ferritin | Rubrerythrin
TC Rep_1125_c_0 Rep_1125_c_0_396 385166 385906 - 3.A.1.3.25
TC Rep_1125_c_0 Rep_1125_c_0_397 385906 388110 - 3.A.1.3.25
pfam Rep_1125_c_0 Rep_1125_c_0_398 388299 390290 + Helicase_C | UVR | ResIII | UvrB | UvrB_inter
STP Rep_1125_c_0 Rep_1125_c_0_399 390309 390773 + NUDIX
TC Rep_1125_c_0 Rep_1125_c_0_400 390896 391732 - 3.A.1.1.27
TC Rep_1125_c_0 Rep_1125_c_0_401 391732 393099 - 3.A.1.1.27
TC Rep_1125_c_0 Rep_1125_c_0_402 393229 394488 - 3.A.1.1.27
TF Rep_1125_c_0 Rep_1125_c_0_403 394832 395860 + LacI
CAZyme Rep_1125_c_0 Rep_1125_c_0_404 396024 397526 + GH77
CAZyme Rep_1125_c_0 Rep_1125_c_0_405 397547 399811 + GT35
TC Rep_1125_c_0 Rep_1125_c_0_406 399978 400796 + 3.A.1.3.27
TC Rep_1125_c_0 Rep_1125_c_0_407 400809 401618 + 3.A.1.3.2
STP Rep_1125_c_0 Rep_1125_c_0_408 401705 402814 + Aminotran_1_2
TC Rep_1125_c_0 Rep_1125_c_0_409 402893 403708 + 3.A.1.3.25
pfam Rep_1125_c_0 Rep_1125_c_0_410 403883 404059 + Ribosomal_S21
TC Rep_1125_c_0 Rep_1125_c_0_411 404132 404515 - 1.A.22.1.5
Gene ID: Rep_1125_c_0_393
Type: TC
Location: 382540 - 383754 (-)
Gene ID: Rep_1125_c_0_394
Type: pfam
Location: 383703 - 384041 (-)
Gene ID: Rep_1125_c_0_395
Type: pfam
Location: 384273 - 384857 (-)
Gene ID: Rep_1125_c_0_396
Type: TC
Location: 385166 - 385906 (-)
Gene ID: Rep_1125_c_0_397
Type: TC
Location: 385906 - 388110 (-)
Gene ID: Rep_1125_c_0_398
Type: pfam
Location: 388299 - 390290 (+)
Gene ID: Rep_1125_c_0_399
Type: STP
Location: 390309 - 390773 (+)
Gene ID: Rep_1125_c_0_400
Type: TC
Location: 390896 - 391732 (-)
Gene ID: Rep_1125_c_0_401
Type: TC
Location: 391732 - 393099 (-)
Gene ID: Rep_1125_c_0_402
Type: TC
Location: 393229 - 394488 (-)
Gene ID: Rep_1125_c_0_403
Type: TF
Location: 394832 - 395860 (+)
Gene ID: Rep_1125_c_0_404
Type: CAZyme
Location: 396024 - 397526 (+)
Gene ID: Rep_1125_c_0_405
Type: CAZyme
Location: 397547 - 399811 (+)
Gene ID: Rep_1125_c_0_406
Type: TC
Location: 399978 - 400796 (+)
Gene ID: Rep_1125_c_0_407
Type: TC
Location: 400809 - 401618 (+)
Gene ID: Rep_1125_c_0_408
Type: STP
Location: 401705 - 402814 (+)
Gene ID: Rep_1125_c_0_409
Type: TC
Location: 402893 - 403708 (+)
Gene ID: Rep_1125_c_0_410
Type: pfam
Location: 403883 - 404059 (+)
Gene ID: Rep_1125_c_0_411
Type: TC
Location: 404132 - 404515 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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