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Cluster: Rep_1125_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1125_c_14 Rep_1125_c_14_19 17844 18533 + 8.A.3.2.3
TC Rep_1125_c_14 Rep_1125_c_14_20 18548 19288 + 8.A.3.2.3
TC Rep_1125_c_14 Rep_1125_c_14_21 19327 20703 + 9.B.18.1.2
CAZyme Rep_1125_c_14 Rep_1125_c_14_22 20742 21911 + GT4
CAZyme Rep_1125_c_14 Rep_1125_c_14_23 21883 22860 + GT2
CAZyme Rep_1125_c_14 Rep_1125_c_14_24 22874 23899 + GT4
NULL(UNKNOWN) Rep_1125_c_14 Rep_1125_c_14_25 23911 25080 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1125_c_14 Rep_1125_c_14_26 25077 26222 + GT4
CAZyme Rep_1125_c_14 Rep_1125_c_14_27 26253 28268 + GT2
TC Rep_1125_c_14 Rep_1125_c_14_28 28261 29778 + 2.A.66.1.40
Gene ID: Rep_1125_c_14_19
Type: TC
Location: 17844 - 18533 (+)
Gene ID: Rep_1125_c_14_20
Type: TC
Location: 18548 - 19288 (+)
Gene ID: Rep_1125_c_14_21
Type: TC
Location: 19327 - 20703 (+)
Gene ID: Rep_1125_c_14_22
Type: CAZyme
Location: 20742 - 21911 (+)
Gene ID: Rep_1125_c_14_23
Type: CAZyme
Location: 21883 - 22860 (+)
Gene ID: Rep_1125_c_14_24
Type: CAZyme
Location: 22874 - 23899 (+)
Gene ID: Rep_1125_c_14_25
Type:
Location: 23911 - 25080 (+)
Gene ID: Rep_1125_c_14_26
Type: CAZyme
Location: 25077 - 26222 (+)
Gene ID: Rep_1125_c_14_27
Type: CAZyme
Location: 26253 - 28268 (+)
Gene ID: Rep_1125_c_14_28
Type: TC
Location: 28261 - 29778 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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