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Cluster: Rep_1125_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1125_c_6 Rep_1125_c_6_29 31621 32262 + 3.A.1.3.15
TC Rep_1125_c_6 Rep_1125_c_6_30 32274 32903 + 3.A.1.3.2
STP Rep_1125_c_6 Rep_1125_c_6_31 32928 33770 + SBP_bac_3
TC Rep_1125_c_6 Rep_1125_c_6_32 33919 35142 - 2.A.4.7.6
TC Rep_1125_c_6 Rep_1125_c_6_33 35318 36646 - 2.A.25.1.4
CAZyme Rep_1125_c_6 Rep_1125_c_6_34 37023 37613 + GH1
CAZyme Rep_1125_c_6 Rep_1125_c_6_35 37610 38485 + GH1
pfam Rep_1125_c_6 Rep_1125_c_6_36 38552 39016 + His_Phos_1
pfam Rep_1125_c_6 Rep_1125_c_6_37 39168 39695 + His_Phos_1
TC Rep_1125_c_6 Rep_1125_c_6_38 39862 40980 + 2.A.86.1.8
CAZyme Rep_1125_c_6 Rep_1125_c_6_39 40987 41826 + GT8
Gene ID: Rep_1125_c_6_29
Type: TC
Location: 31621 - 32262 (+)
Gene ID: Rep_1125_c_6_30
Type: TC
Location: 32274 - 32903 (+)
Gene ID: Rep_1125_c_6_31
Type: STP
Location: 32928 - 33770 (+)
Gene ID: Rep_1125_c_6_32
Type: TC
Location: 33919 - 35142 (-)
Gene ID: Rep_1125_c_6_33
Type: TC
Location: 35318 - 36646 (-)
Gene ID: Rep_1125_c_6_34
Type: CAZyme
Location: 37023 - 37613 (+)
Gene ID: Rep_1125_c_6_35
Type: CAZyme
Location: 37610 - 38485 (+)
Gene ID: Rep_1125_c_6_36
Type: pfam
Location: 38552 - 39016 (+)
Gene ID: Rep_1125_c_6_37
Type: pfam
Location: 39168 - 39695 (+)
Gene ID: Rep_1125_c_6_38
Type: TC
Location: 39862 - 40980 (+)
Gene ID: Rep_1125_c_6_39
Type: CAZyme
Location: 40987 - 41826 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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