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Cluster: Rep_1119_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1119_c_6 Rep_1119_c_6_112 113614 115875 - GT35
CAZyme Rep_1119_c_6 Rep_1119_c_6_113 115877 117376 - GH77
TF Rep_1119_c_6 Rep_1119_c_6_114 117639 118631 - LacI
TC Rep_1119_c_6 Rep_1119_c_6_115 118812 120059 + 3.A.1.1.27
TC Rep_1119_c_6 Rep_1119_c_6_116 120149 121507 + 3.A.1.1.27
TC Rep_1119_c_6 Rep_1119_c_6_117 121507 122343 + 3.A.1.1.27
TC Rep_1119_c_6 Rep_1119_c_6_118 122359 123495 + 3.A.1.1.28
pfam Rep_1119_c_6 Rep_1119_c_6_119 123882 124070 - TatA_B_E
TC Rep_1119_c_6 Rep_1119_c_6_120 124083 124811 - 2.A.64.3.1
TC Rep_1119_c_6 Rep_1119_c_6_121 124798 126483 - 2.A.108.2.5
TC Rep_1119_c_6 Rep_1119_c_6_122 126461 127666 - 2.A.108.2.3
TC Rep_1119_c_6 Rep_1119_c_6_123 127672 128544 - 2.A.108.2.3
CAZyme Rep_1119_c_6 Rep_1119_c_6_124 128795 132508 - CBM41 | CBM41 | GH13_12
pfam Rep_1119_c_6 Rep_1119_c_6_125 132628 132873 - Amidase_3
pfam Rep_1119_c_6 Rep_1119_c_6_126 132876 133589 - GBS_Bsp-like
CAZyme Rep_1119_c_6 Rep_1119_c_6_127 133883 137434 - GH25
Gene ID: Rep_1119_c_6_112
Type: CAZyme
Location: 113614 - 115875 (-)
Gene ID: Rep_1119_c_6_113
Type: CAZyme
Location: 115877 - 117376 (-)
Gene ID: Rep_1119_c_6_114
Type: TF
Location: 117639 - 118631 (-)
Gene ID: Rep_1119_c_6_115
Type: TC
Location: 118812 - 120059 (+)
Gene ID: Rep_1119_c_6_116
Type: TC
Location: 120149 - 121507 (+)
Gene ID: Rep_1119_c_6_117
Type: TC
Location: 121507 - 122343 (+)
Gene ID: Rep_1119_c_6_118
Type: TC
Location: 122359 - 123495 (+)
Gene ID: Rep_1119_c_6_119
Type: pfam
Location: 123882 - 124070 (-)
Gene ID: Rep_1119_c_6_120
Type: TC
Location: 124083 - 124811 (-)
Gene ID: Rep_1119_c_6_121
Type: TC
Location: 124798 - 126483 (-)
Gene ID: Rep_1119_c_6_122
Type: TC
Location: 126461 - 127666 (-)
Gene ID: Rep_1119_c_6_123
Type: TC
Location: 127672 - 128544 (-)
Gene ID: Rep_1119_c_6_124
Type: CAZyme
Location: 128795 - 132508 (-)
Gene ID: Rep_1119_c_6_125
Type: pfam
Location: 132628 - 132873 (-)
Gene ID: Rep_1119_c_6_126
Type: pfam
Location: 132876 - 133589 (-)
Gene ID: Rep_1119_c_6_127
Type: CAZyme
Location: 133883 - 137434 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1119_c_6_112 vegan > omnivore 1.18699 0.00937
Rep_1119_c_6_115 vegan > omnivore 1.05802 0.00937
Rep_1119_c_6_122 vegan > omnivore 1.05260 0.00937
Rep_1119_c_6_122 vegetarian > omnivore 1.78989 0.01447
Rep_1119_c_6_125 vegan > omnivore 2.17760 0.00937

🧭 Explore Read Mapping of CGC

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