Cluster: Rep_1119_CGC4
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_1119
- CGC Family ID: CGCFAM_00003
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1119_c_4 | Rep_1119_c_4_126 | 126785 | 127711 | + | GT2 |
| TC | Rep_1119_c_4 | Rep_1119_c_4_127 | 127716 | 129191 | + | 3.A.7.19.1 |
| pfam | Rep_1119_c_4 | Rep_1119_c_4_128 | 129277 | 130128 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | Rep_1119_c_4 | Rep_1119_c_4_129 | 130247 | 131500 | + | Polysacc_synt |
| CAZyme | Rep_1119_c_4 | Rep_1119_c_4_130 | 131506 | 132450 | + | GT2 |
| CAZyme | Rep_1119_c_4 | Rep_1119_c_4_131 | 132468 | 133436 | + | GT2 |
| CAZyme | Rep_1119_c_4 | Rep_1119_c_4_132 | 133449 | 134153 | + | GT2 |
| pfam | Rep_1119_c_4 | Rep_1119_c_4_133 | 134153 | 134506 | + | DUF2304 |
| CAZyme | Rep_1119_c_4 | Rep_1119_c_4_134 | 134499 | 135275 | + | GT2 |
| NULL(UNKNOWN) | Rep_1119_c_4 | Rep_1119_c_4_135 | 135268 | 136524 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1119_c_4 | Rep_1119_c_4_136 | 136701 | 139652 | + | GT2 |
| pfam | Rep_1119_c_4 | Rep_1119_c_4_137 | 139711 | 140946 | + | DUF2142 |
| CAZyme | Rep_1119_c_4 | Rep_1119_c_4_138 | 140950 | 142197 | + | GT4 |
| CAZyme | Rep_1119_c_4 | Rep_1119_c_4_139 | 142364 | 143512 | + | GT4 |
| CAZyme | Rep_1119_c_4 | Rep_1119_c_4_140 | 143509 | 144447 | + | GT2 |
| pfam | Rep_1119_c_4 | Rep_1119_c_4_141 | 144448 | 145254 | + | ABC2_membrane |
| TC | Rep_1119_c_4 | Rep_1119_c_4_142 | 145254 | 146456 | + | 3.A.1.103.5 |
Gene ID: Rep_1119_c_4_126
Type: CAZyme
Location: 126785 - 127711 (+)
Type: CAZyme
Location: 126785 - 127711 (+)
Gene ID: Rep_1119_c_4_127
Type: TC
Location: 127716 - 129191 (+)
Type: TC
Location: 127716 - 129191 (+)
Gene ID: Rep_1119_c_4_128
Type: pfam
Location: 129277 - 130128 (+)
Type: pfam
Location: 129277 - 130128 (+)
Gene ID: Rep_1119_c_4_129
Type: pfam
Location: 130247 - 131500 (+)
Type: pfam
Location: 130247 - 131500 (+)
Gene ID: Rep_1119_c_4_130
Type: CAZyme
Location: 131506 - 132450 (+)
Type: CAZyme
Location: 131506 - 132450 (+)
Gene ID: Rep_1119_c_4_131
Type: CAZyme
Location: 132468 - 133436 (+)
Type: CAZyme
Location: 132468 - 133436 (+)
Gene ID: Rep_1119_c_4_132
Type: CAZyme
Location: 133449 - 134153 (+)
Type: CAZyme
Location: 133449 - 134153 (+)
Gene ID: Rep_1119_c_4_133
Type: pfam
Location: 134153 - 134506 (+)
Type: pfam
Location: 134153 - 134506 (+)
Gene ID: Rep_1119_c_4_134
Type: CAZyme
Location: 134499 - 135275 (+)
Type: CAZyme
Location: 134499 - 135275 (+)
Gene ID: Rep_1119_c_4_135
Type:
Location: 135268 - 136524 (+)
Type:
Location: 135268 - 136524 (+)
Gene ID: Rep_1119_c_4_136
Type: CAZyme
Location: 136701 - 139652 (+)
Type: CAZyme
Location: 136701 - 139652 (+)
Gene ID: Rep_1119_c_4_137
Type: pfam
Location: 139711 - 140946 (+)
Type: pfam
Location: 139711 - 140946 (+)
Gene ID: Rep_1119_c_4_138
Type: CAZyme
Location: 140950 - 142197 (+)
Type: CAZyme
Location: 140950 - 142197 (+)
Gene ID: Rep_1119_c_4_139
Type: CAZyme
Location: 142364 - 143512 (+)
Type: CAZyme
Location: 142364 - 143512 (+)
Gene ID: Rep_1119_c_4_140
Type: CAZyme
Location: 143509 - 144447 (+)
Type: CAZyme
Location: 143509 - 144447 (+)
Gene ID: Rep_1119_c_4_141
Type: pfam
Location: 144448 - 145254 (+)
Type: pfam
Location: 144448 - 145254 (+)
Gene ID: Rep_1119_c_4_142
Type: TC
Location: 145254 - 146456 (+)
Type: TC
Location: 145254 - 146456 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp001556435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.