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Cluster: Rep_1119_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1119_c_20 Rep_1119_c_20_18 17588 18175 + GH23
TC Rep_1119_c_20 Rep_1119_c_20_19 18206 19945 + 3.A.1.135.5
TC Rep_1119_c_20 Rep_1119_c_20_20 19935 21683 + 3.A.1.135.5
TC Rep_1119_c_20 Rep_1119_c_20_21 22000 23550 + 4.C.1.1.7
TC Rep_1119_c_20 Rep_1119_c_20_22 23547 24794 + 2.A.50.2.1
pfam Rep_1119_c_20 Rep_1119_c_20_23 24812 25051 + PP-binding
pfam Rep_1119_c_20 Rep_1119_c_20_24 25044 26312 + DltD
TC Rep_1119_c_20 Rep_1119_c_20_25 26500 29136 - 3.A.3.2.22
Gene ID: Rep_1119_c_20_18
Type: CAZyme
Location: 17588 - 18175 (+)
Gene ID: Rep_1119_c_20_19
Type: TC
Location: 18206 - 19945 (+)
Gene ID: Rep_1119_c_20_20
Type: TC
Location: 19935 - 21683 (+)
Gene ID: Rep_1119_c_20_21
Type: TC
Location: 22000 - 23550 (+)
Gene ID: Rep_1119_c_20_22
Type: TC
Location: 23547 - 24794 (+)
Gene ID: Rep_1119_c_20_23
Type: pfam
Location: 24812 - 25051 (+)
Gene ID: Rep_1119_c_20_24
Type: pfam
Location: 25044 - 26312 (+)
Gene ID: Rep_1119_c_20_25
Type: TC
Location: 26500 - 29136 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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