Cluster: Rep_1119_CGC17
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1119
- CGC Family ID: CGCFAM_06130
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1119_c_16 | Rep_1119_c_16_30 | 37518 | 38792 | - | GT1 |
| pfam | Rep_1119_c_16 | Rep_1119_c_16_31 | 39054 | 39830 | + | adh_short | Epimerase | Sacchrp_dh_NADP | KR | adh_short_C2 |
| CAZyme | Rep_1119_c_16 | Rep_1119_c_16_32 | 39827 | 40969 | + | GT21 |
| NULL(UNKNOWN) | Rep_1119_c_16 | Rep_1119_c_16_33 | 40962 | 41618 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1119_c_16 | Rep_1119_c_16_34 | 41578 | 42861 | + | GT1 |
| NULL(UNKNOWN) | Rep_1119_c_16 | Rep_1119_c_16_35 | 42952 | 43437 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_1119_c_16 | Rep_1119_c_16_36 | 43441 | 44796 | - | DnaJ |
| TC | Rep_1119_c_16 | Rep_1119_c_16_37 | 44807 | 46576 | - | 1.A.33.1.4 |
| TC | Rep_1119_c_16 | Rep_1119_c_16_38 | 46922 | 47860 | - | 2.A.28.2.6 |
| NULL(UNKNOWN) | Rep_1119_c_16 | Rep_1119_c_16_39 | 48003 | 48452 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1119_c_16 | Rep_1119_c_16_40 | 48463 | 49200 | - | 3.A.1.142.1 |
| TC | Rep_1119_c_16 | Rep_1119_c_16_41 | 49197 | 50078 | - | 3.A.1.142.1 |
Gene ID: Rep_1119_c_16_30
Type: CAZyme
Location: 37518 - 38792 (-)
Type: CAZyme
Location: 37518 - 38792 (-)
Gene ID: Rep_1119_c_16_31
Type: pfam
Location: 39054 - 39830 (+)
Type: pfam
Location: 39054 - 39830 (+)
Gene ID: Rep_1119_c_16_32
Type: CAZyme
Location: 39827 - 40969 (+)
Type: CAZyme
Location: 39827 - 40969 (+)
Gene ID: Rep_1119_c_16_33
Type:
Location: 40962 - 41618 (+)
Type:
Location: 40962 - 41618 (+)
Gene ID: Rep_1119_c_16_34
Type: CAZyme
Location: 41578 - 42861 (+)
Type: CAZyme
Location: 41578 - 42861 (+)
Gene ID: Rep_1119_c_16_35
Type:
Location: 42952 - 43437 (-)
Type:
Location: 42952 - 43437 (-)
Gene ID: Rep_1119_c_16_36
Type: pfam
Location: 43441 - 44796 (-)
Type: pfam
Location: 43441 - 44796 (-)
Gene ID: Rep_1119_c_16_37
Type: TC
Location: 44807 - 46576 (-)
Type: TC
Location: 44807 - 46576 (-)
Gene ID: Rep_1119_c_16_38
Type: TC
Location: 46922 - 47860 (-)
Type: TC
Location: 46922 - 47860 (-)
Gene ID: Rep_1119_c_16_39
Type:
Location: 48003 - 48452 (-)
Type:
Location: 48003 - 48452 (-)
Gene ID: Rep_1119_c_16_40
Type: TC
Location: 48463 - 49200 (-)
Type: TC
Location: 48463 - 49200 (-)
Gene ID: Rep_1119_c_16_41
Type: TC
Location: 49197 - 50078 (-)
Type: TC
Location: 49197 - 50078 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp001556435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.