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Cluster: Rep_1119_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1119_c_9 Rep_1119_c_9_45 40351 41268 - 2.A.7.3.12
pfam Rep_1119_c_9 Rep_1119_c_9_46 41366 42409 - ADH_zinc_N | ADH_N | Glu_dehyd_C
NULL(UNKNOWN) Rep_1119_c_9 Rep_1119_c_9_47 42568 42951 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1119_c_9 Rep_1119_c_9_48 43040 44386 - 4.A.3.2.3
NULL(UNKNOWN) Rep_1119_c_9 Rep_1119_c_9_49 44445 44951 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1119_c_9 Rep_1119_c_9_50 44981 45295 - 4.A.3.2.1
TF Rep_1119_c_9 Rep_1119_c_9_51 45305 47281 - HTH_11 | Mga
pfam Rep_1119_c_9 Rep_1119_c_9_52 47445 47759 - PTS_IIB
TC Rep_1119_c_9 Rep_1119_c_9_53 47891 48130 - 2.A.123.2.3
CAZyme Rep_1119_c_9 Rep_1119_c_9_54 48185 49621 - GH1
Gene ID: Rep_1119_c_9_45
Type: TC
Location: 40351 - 41268 (-)
Gene ID: Rep_1119_c_9_46
Type: pfam
Location: 41366 - 42409 (-)
Gene ID: Rep_1119_c_9_47
Type:
Location: 42568 - 42951 (-)
Gene ID: Rep_1119_c_9_48
Type: TC
Location: 43040 - 44386 (-)
Gene ID: Rep_1119_c_9_49
Type:
Location: 44445 - 44951 (-)
Gene ID: Rep_1119_c_9_50
Type: TC
Location: 44981 - 45295 (-)
Gene ID: Rep_1119_c_9_51
Type: TF
Location: 45305 - 47281 (-)
Gene ID: Rep_1119_c_9_52
Type: pfam
Location: 47445 - 47759 (-)
Gene ID: Rep_1119_c_9_53
Type: TC
Location: 47891 - 48130 (-)
Gene ID: Rep_1119_c_9_54
Type: CAZyme
Location: 48185 - 49621 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1119_c_9_49 vegan > omnivore 2.39023 0.00937
Rep_1119_c_9_53 vegan > omnivore 2.70681 0.00937

🧭 Explore Read Mapping of CGC

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