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Cluster: Rep_1117_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1117_c_3 Rep_1117_c_3_41 35544 36983 + GH1
NULL(UNKNOWN) Rep_1117_c_3 Rep_1117_c_3_42 37202 37336 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1117_c_3 Rep_1117_c_3_43 37346 37612 + Glyco_transf_8
CAZyme Rep_1117_c_3 Rep_1117_c_3_44 37569 38063 + GT4
pfam Rep_1117_c_3 Rep_1117_c_3_45 38203 38505 + GatC
TC Rep_1117_c_3 Rep_1117_c_3_46 38505 39971 + 3.A.9.1.1
pfam Rep_1117_c_3 Rep_1117_c_3_47 39971 41413 + GatB_Yqey | GatB_N
NULL(UNKNOWN) Rep_1117_c_3 Rep_1117_c_3_48 41516 41881 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1117_c_3 Rep_1117_c_3_49 42036 43475 + GH1
TC Rep_1117_c_3 Rep_1117_c_3_50 43530 43769 + 2.A.123.2.3
pfam Rep_1117_c_3 Rep_1117_c_3_51 43901 44215 + PTS_IIB
TF Rep_1117_c_3 Rep_1117_c_3_52 44379 46355 + HTH_11 | Mga
TC Rep_1117_c_3 Rep_1117_c_3_53 46365 46679 + 4.A.3.2.7
NULL(UNKNOWN) Rep_1117_c_3 Rep_1117_c_3_54 46709 47215 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1117_c_3 Rep_1117_c_3_55 47275 48621 + 4.A.3.2.3
NULL(UNKNOWN) Rep_1117_c_3 Rep_1117_c_3_56 48712 49095 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1117_c_3 Rep_1117_c_3_57 49172 50089 + 2.A.7.3.12
Gene ID: Rep_1117_c_3_41
Type: CAZyme
Location: 35544 - 36983 (+)
Gene ID: Rep_1117_c_3_42
Type:
Location: 37202 - 37336 (+)
Gene ID: Rep_1117_c_3_43
Type: pfam
Location: 37346 - 37612 (+)
Gene ID: Rep_1117_c_3_44
Type: CAZyme
Location: 37569 - 38063 (+)
Gene ID: Rep_1117_c_3_45
Type: pfam
Location: 38203 - 38505 (+)
Gene ID: Rep_1117_c_3_46
Type: TC
Location: 38505 - 39971 (+)
Gene ID: Rep_1117_c_3_47
Type: pfam
Location: 39971 - 41413 (+)
Gene ID: Rep_1117_c_3_48
Type:
Location: 41516 - 41881 (-)
Gene ID: Rep_1117_c_3_49
Type: CAZyme
Location: 42036 - 43475 (+)
Gene ID: Rep_1117_c_3_50
Type: TC
Location: 43530 - 43769 (+)
Gene ID: Rep_1117_c_3_51
Type: pfam
Location: 43901 - 44215 (+)
Gene ID: Rep_1117_c_3_52
Type: TF
Location: 44379 - 46355 (+)
Gene ID: Rep_1117_c_3_53
Type: TC
Location: 46365 - 46679 (+)
Gene ID: Rep_1117_c_3_54
Type:
Location: 46709 - 47215 (+)
Gene ID: Rep_1117_c_3_55
Type: TC
Location: 47275 - 48621 (+)
Gene ID: Rep_1117_c_3_56
Type:
Location: 48712 - 49095 (+)
Gene ID: Rep_1117_c_3_57
Type: TC
Location: 49172 - 50089 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1117_c_3_42 vegan > omnivore 1.29964 0.01589
Rep_1117_c_3_42 vegetarian > omnivore 2.09596 0.03885
Rep_1117_c_3_50 vegan > omnivore 2.81076 0.01589
Rep_1117_c_3_54 vegan > omnivore 2.60840 0.01589

🧭 Explore Read Mapping of CGC

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