Cluster: Rep_1117_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1117
- CGC Family ID: CGCFAM_00060
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1117_c_1 | Rep_1117_c_1_121 | 139231 | 140841 | + | GH13_31 |
| pfam | Rep_1117_c_1 | Rep_1117_c_1_122 | 140970 | 141971 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | KR | NAD_binding_10 | GDP_Man_Dehyd |
| TC | Rep_1117_c_1 | Rep_1117_c_1_123 | 142105 | 142947 | + | 8.A.5.1.6 |
| pfam | Rep_1117_c_1 | Rep_1117_c_1_124 | 143051 | 143737 | + | DUF1275 |
| STP | Rep_1117_c_1 | Rep_1117_c_1_125 | 143829 | 144461 | + | Nitroreductase |
| TC | Rep_1117_c_1 | Rep_1117_c_1_126 | 144651 | 145943 | + | 4.A.3.2.9 |
Gene ID: Rep_1117_c_1_121
Type: CAZyme
Location: 139231 - 140841 (+)
Type: CAZyme
Location: 139231 - 140841 (+)
Gene ID: Rep_1117_c_1_122
Type: pfam
Location: 140970 - 141971 (+)
Type: pfam
Location: 140970 - 141971 (+)
Gene ID: Rep_1117_c_1_123
Type: TC
Location: 142105 - 142947 (+)
Type: TC
Location: 142105 - 142947 (+)
Gene ID: Rep_1117_c_1_124
Type: pfam
Location: 143051 - 143737 (+)
Type: pfam
Location: 143051 - 143737 (+)
Gene ID: Rep_1117_c_1_125
Type: STP
Location: 143829 - 144461 (+)
Type: STP
Location: 143829 - 144461 (+)
Gene ID: Rep_1117_c_1_126
Type: TC
Location: 144651 - 145943 (+)
Type: TC
Location: 144651 - 145943 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Species
Streptococcus sp902463925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1117_c_1_121 | vegan > omnivore | 2.26336 | 0.01589 |